AT5G40480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : embryo defective 3012 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 3012 (EMB3012); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Invasin/intimin cell-adhesion (InterPro:IPR008964), Bacterial Ig-like, group 2 (InterPro:IPR003343); Has 264 Blast hits to 238 proteins in 89 species: Archae - 0; Bacteria - 31; Metazoa - 150; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16213361..16223982 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 210677.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.89 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1923 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVPVSFCFFF LLLLLSAGES SSQLVSGPHI TDVNILLPPK MKNPVEYRLQ GSDGCFKWSW DHHDILSVTP EFNSSSHCST SARLRSISPY SGRKETAVYA 0101: TDIQTGMVIR CKVFIDNFSR IQIFHNSIKL DLDGLSMLRV RAFDNEDNEF SSLVGLQFIW KLMPESGGST HHLAHVPLKE SPLTDCGGLC GYLDIQKKLE 0201: DSGVFADLFV VKGTKIGHEK VSVHLLEAPL THIADEIVLT VAEAMSLEPR SPVYVLMGAS FGYTLKVMRG NVPQAVDLPS PHHRWSVLNS SVAQVDSLIG 0301: LTKALSLGVT TVVVEDTRVA GHIQGSSINV VTPDTLILYI SPWSMSGDLI TESKPFPSSM HWYVVSGRQY LIQMKIFSGR PDAHEIYITE TDDIKLYGKD 0401: SDYWKIVSLP DELSSEYGQR NSRILNAISP GLGELTSTLT YFSGHQESKE VLKVVQEIRV CEKVQFTLNS EDDTPKVLLP WTPAVYQEME LIVTGGCAKA 0501: SSDYKWFTSD ISILSVSAYG IIQAKRPGIA TVKVVSTFDS QNFDEVIVEV SIPSSMVMLQ NFPVETVVGS HLKAAVTMKA LNGATFSRCD AFNSLIKWKT 0601: GSESFVIVNA TSEMMMLDEL RSMDSSPPCS RASIYTASTG RTVLQATLAK EFHYFDKSLS ESIDLKATLT IGAYLPLSVR QDSDGNHHGG YWFDKAQEET 0701: DFGVSKLYLV PGTYVDVMLL GGPERWDDNV EFTETVKTLY EDEEDLTSRV NVHHEVDRRA NMYRISCQKL GSYKLVFLRG NLLGIDHPVP AVAEALLSVH 0801: CSLPSSVVLI VDEPVNKLDV IRAASQADRA PGRLRVTPVT VANGQIIRVA AVGISEFGEA FSNSSTLSLR WELTSCNNLA YWDDDYNSKM TKSGWERFLA 0901: LRNESGLCTV RATVSGIDYS FKSQYSTLLP QGSESTLTDA VRLQLVSTLR VTPEFNLVFF NPNAKVNLSM TGGSCLWEAV VNNSRVAEVI RPPSGLQCSQ 1001: MMLSPKGLGT TIVTVYDIGV SPPLSALALI KVADVDWIKI ASGDEISIME GSTHSIDLLT GIDDGMTFDS SQYSLMDIMV HIEDDLVEHV TVDEDSLSVG 1101: EHVATSSFKI AARRLGITTL YVSARQQSGG KVLSQTIKVE VYSPPRLHPQ GIFLVPGASY VLTIEGGPTM NVSVDYTTVD NEVAKIEKSG RLYATSPGNT 1201: TIYATIYGSE GAVICQAIGN AEVGLPATAM LVAQSDTVAV GHEMPVSPSF PEGDLLSFYE LCSAYKWTIE DEKVLIFIAS SINVEENAGF VNVVQGRSAG 1301: KTRVTIAFSC DFVSPGLYSE SRTYEASMIL SVVPDLPLSL GAPMTWVLPP FYTSSGLLPS SSEPQKHRDG QSHRGNIVYS ILKDCSSRAD FERDTISING 1401: GSVKTTDSNN VACIQAKDRT SGRIEIAACV RVAEVAQIRM KSEGIPFHVI DLAVGGELEL PINYYDTLGI PFLEAHGVTT YNVETNHRDV VFIKTVNDQP 1501: SAYIKGIKHG KALIRVSIGD NLRKSDYVLV SVGAHIFPQN PVIHTGNLLN FSITGADNEV TGQWFTSNRS VISVNVASGQ AKAISQGSTH VTFKGHGLKL 1601: QTKVTVLFGN TIYVDSPGET LTNVHVPAEG YKFPVKFREN KFAVTEHGNK ATFNCQVDPP FIGYTKPWMD LDTGNTYCLF FPYSPEHLVH SMSITKDMKP 1701: HVSFSVDASL KEARRVSGSA SALLIGGFSV TGPDKLNINP DSNTTIISLV GNTDVQIHCR NKGRLSISLI KRDDFGIAGH AQYKVNVLRS EQFTDRIIIT 1801: LPATGQIVEI DVCYDTGESL VASSKDGYSV LLKILWGVLV LVVSVIILMK VIDRQVPTGA TGTATYSGNA AQGTPERRSG TVIYHEESPR TPSPFMEYVK 1901: RTVDETPYYR REGRRRFNPQ NTM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)