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AT5G13520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.917
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : peptidase M1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
peptidase M1 family protein; FUNCTIONS IN: metallopeptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis, leukotriene biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase (InterPro:IPR001930), Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782), Peptidase M1, leukotriene A4 hydrolase, aminopeptidase C-terminal (InterPro:IPR015211), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: aminopeptidase M1 (TAIR:AT4G33090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G13520-MONOMERBioGrid:16474EC:3.3.2.6eggNOG:COG0308
eggNOG:KOG1047EMBL:AK220991EMBL:AL391710EMBL:AY074335
EMBL:AY133832EMBL:CP002688EnsemblPlants:AT5G13520EnsemblPlants:AT5G13520.1
entrez:831196GeneID:831196Genevisible:Q9FY49GO:GO:0004463
GO:GO:0005829GO:GO:0008237GO:GO:0008270GO:GO:0019370
Gramene:AT5G13520.1hmmpanther:PTHR11533HOGENOM:HOG000293296InParanoid:Q9FY49
InterPro:IPR001930InterPro:IPR014782InterPro:IPR015211InterPro:IPR016024
KEGG:00590+3.3.2.6KEGG:ath:AT5G13520KO:K01254MEROPS:M01.A26
OMA:MAPVDPHPANTHER:PTHR11533PaxDb:Q9FY49Pfam:PF01433
Pfam:PF09127Pfam:Q9FY49PhylomeDB:Q9FY49PRIDE:Q9FY49
PRINTS:PR00756PRO:PR:Q9FY49PROSITE:PS00142ProteinModelPortal:Q9FY49
Proteomes:UP000006548Reactome:R-ATH-2142691RefSeq:NP_196856.1SMART:SM01263
SMR:Q9FY49STRING:3702.AT5G13520.1SUPFAM:0038696SUPFAM:SSF48371
SUPFAM:SSF55486TAIR:AT5G13520UniGene:At.32058UniGene:At.69710
UniPathway:UPA00878UniProt:Q9FY49
Coordinates (TAIR10) chr5:-:4342117..4344571
Molecular Weight (calculated) 69269.70 Da
IEP (calculated) 4.89
GRAVY (calculated) -0.18
Length 616 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPIDPHSFT DSSHPLTTHV ALSLYLDFNT SIIHGSALLT LSSAFSGELS LDTRCISIAM VLDPLTLEPI PYSVSTTPDR IRGTEVVVVL SGQSSLLIVY
101: STSPSASALQ WLSPLQTFSK LHPYVYTQCQ AIHARSIFPC QDTPAARIRY DVVMNIPNSL SAVMSARHVR RRLAVPEEAK HLEAGSLGSS LWCGEDRVVE
201: EFAMEQPIPP YLFAFAVGEL GFREVGPRTR VYTESAAIEV LDAAALEFAG TEDMIKQGEK LFGDYEWERF DLLVLPPSFP YGGMENPRMV FLTPTVIKGD
301: ATGAQVVAHE LAHSWTGNLI TNINNEHFWL NEGFTTYAER RIVEVVQGAD IATLNIGIGW RGLTDEMERF KDNLECTKLW NKQEGVDPDD VYSQVPYEKG
401: FQFVLRIERQ IGRTAFDEFL KKYIATFKFK SIDTNTFLEF LKANIPGIEK EINLQLWTEG VGIPEDAYEP VSTIYTKIIS LAKEFKEGKM PSEDDVAEWN
501: GQEWELYLEN LPKSCEPSQV MALDKRYRLA ESKDYEVKVS FLQLAVTSKC REYHGEVKKT LKEVGRMKYL RPLFTALAQS GGTEEKQLAK QVFAEARETY
601: HPIAQGVVES ILSKYI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)