AT3G20260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1666) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT1G73850.1); Has 288 Blast hits to 284 proteins in 72 species: Archae - 0; Bacteria - 2; Metazoa - 64; Fungi - 36; Plants - 99; Viruses - 14; Other Eukaryotes - 73 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7064190..7065751 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50510.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.46 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||||||
| Length | 437 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFLKVRKFR KSRKPNLEKE KEDKILAQQE QARSENTEAG VIDSGKGDEI EDDDDDFITN EVKRRLKELR RNSFMVLIPE EEEEEEEESY LDEDDDDGED 101: KCSSEWRDVV AEGLQWWGGF DAVYEKYCER MLFFDRLSSQ QLKETGIGIA PSPSTPSPRS ASKKLSSPFR CLSLKKFDVP EEDIEHLQPT EVDDPYQDLE 201: TAYVAQLCLT WEALHCQYTQ LSHLISCQPE TPTCYNHTAQ LFQQFLVLLQ RYIENEPFEQ GSRSELYARA RNAMPKLLQA PKIQGSDKKE MEKDTGFMVL 301: ADDLIKVIES SILTFNVFLK MDKKKPNGGI HLFGNHNNNH VNSTTPLLLV QSSIDKKRVK AKELSKKTKG LRKKSWPQTW EGVQLLFAAI DIKLATRVLR 401: MSKISKEQLL WCEEKMKKLN FSAGKLQRHP SPILFPC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)