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AT4G11450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3527)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3527); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT1G63520.1); Has 132 Blast hits to 129 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGPBeggNOG:ENOG410YA6YEMBL:AL050399EMBL:AL161532
EMBL:CP002687EnsemblPlants:AT4G11450EnsemblPlants:AT4G11450.1entrez:826749
GeneID:826749Gramene:AT4G11450.1hmmpanther:PTHR31390hmmpanther:PTHR31390:SF1
HOGENOM:HOG000084917InterPro:IPR021916KEGG:ath:AT4G11450OMA:AKEHIPA
Pfam:PF12043PhylomeDB:Q9LE58PIR:T10565Proteomes:UP000006548
RefSeq:NP_192884.1TAIR:AT4G11450UniGene:At.33569UniProt:Q9LE58
Coordinates (TAIR10) chr4:-:6959065..6961223
Molecular Weight (calculated) 77985.30 Da
IEP (calculated) 8.64
GRAVY (calculated) -0.67
Length 694 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFGKGIDME QSPNSVLPPP RPFTESEKRT STRLKPPRRD EILRVKEGFT EISFRRYRST SCKNFPSKPL AMGDTTELRR GSVYQSSNEL FKELREPQGR
101: KDSKAKLELS RSSDASFSFR VVDSSRKGST EKRPHKTVLD GQKSLVEPCT SSNFIDICLK SGIKDRAVVL DSDDNDHKIR LPKPYSAKVD SVETSYNKDS
201: SRVRKMFDPF VKSKSLRSPL GYIGESGDQF KLGRNSERCR SMLSDYSNIH KRSNLCPPPV VNKDYTSVLK SSPVHLHCRL KMESKNGLPV FQFVSDSPEE
301: VYAAKTWKSD NGSTWVYTFS SAGSRKRSSA SVRGLTDVSK ESLLVAQMQV TCKMCSEVRK KGQDPETLMV NEFVLYDIAQ ARRSVSTKED QSLPLDTVNN
401: ASKNSVKSDS EIRNNSMSGD ASDTMKQRSQ PKRTSQSYDL EASNGTNPWS AANLHPDLEI AAIIIQDTIE KRESLKYRRG DKRLMEKTNI LGLSPIEEEK
501: KELFGSRSLE KLKVVIPRGN HGLPTTENSC PSPLIQRWRS GGGCDCGGWD MACPLMVLGN PRISCSHDQP LVENQHPLQL FVQGAKEHIP ALYMSFVEEG
601: QYDVHFHAQL STLQAFSICV AILHNTEVSD SYRNGENVQQ FSHCNSLKML IDDDVQFLVE AVTEEEEVPK PLKEAVTALQ SYMPNPPFSP ISRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)