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AT2G23700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF547
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G66600.2); Has 867 Blast hits to 688 proteins in 125 species: Archae - 4; Bacteria - 86; Metazoa - 75; Fungi - 16; Plants - 587; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVYKeggNOG:ENOG41105FMEMBL:AC004482EMBL:CP002685
EnsemblPlants:AT2G23700EnsemblPlants:AT2G23700.1entrez:816901GeneID:816901
Gramene:AT2G23700.1hmmpanther:PTHR23054hmmpanther:PTHR23054:SF18HOGENOM:HOG000242902
InterPro:IPR006869InterPro:IPR025757KEGG:ath:AT2G23700ncoils:Coil
OMA:SHESMSEPfam:PF04784Pfam:PF14389PhylomeDB:O64832
PIR:T02421Proteomes:UP000006548RefSeq:NP_179950.1STRING:3702.AT2G23700.1
TAIR:AT2G23700UniGene:At.39258UniProt:O64832
Coordinates (TAIR10) chr2:-:10076624..10079849
Molecular Weight (calculated) 81329.70 Da
IEP (calculated) 9.35
GRAVY (calculated) -0.74
Length 707 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFEDKKMLR QRHKRSKSCT VPEKKKLEDE NSIDSSLDAS QRLKLDLPRC GDKSFEMKKD LSPDVKFKSS LKQEIQELEK RLQNQFDVRG ALEKALGYKT
101: PSRDIKGDST PKPPTELIKE IAVLELEVSH LEQYLLSLYR KAFDQQTSSV SPPTSKQQSS CSPKSTLRGK RLDFSRTPES RCFSFDNRLK SPRLVEKELE
201: SPNLRCRQES LATQPRCFSF DNRLKEPSSA GRQCNQEVSR IDSRSFSFDN RVKEPGSAAR HFNQEDSRID SQCVSFDNRV KEPVSGVRQF DQESSRIDSR
301: CFSFDNRLKD QCFIEKEDID SCVRRCQSSL NQRSTFNNRI SPPEDSVFAC HSQPLSIHEY IQNGSNDASL AEHMGTRISD HIFMTPNKLS EEMIKCASAI
401: YSKLADPPSI NHGFSSPSSS PSSTSEFSPQ DQYDMWSPSF RKNSSFDDQF EFSGPYSSMI EVSHIHRNRK RRDLDLMNRN FSLLLKQLES VDPRKLTHQE
501: KLAFWINVHN ALVMHTFLAN GIPQNNGKRF LLLSKPAYKI GGRMVSLEAI QSYILRIKMP RPGQWLKLLL IPKKFRTGDE HQEYSLEHSE PLLYFALCSG
601: NHSDPAIRVF TPKGIYQELE TAKEEYIRAT FGVKKDQKLV LPKIIESFSK DSGLGQAALM EMIQECLPET MKKTIKKLNS GRSRKSIVEW TPHNFVFRYL
701: IARELVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)