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AT2G38970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.819
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger (C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G54780.1); Has 4418 Blast hits to 4397 proteins in 764 species: Archae - 94; Bacteria - 1613; Metazoa - 1251; Fungi - 170; Plants - 535; Viruses - 5; Other Eukaryotes - 750 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2304eggNOG:ENOG410IGY0EMBL:CP002685EnsemblPlants:AT2G38970
EnsemblPlants:AT2G38970.1entrez:818482Gene3D:3.30.40.10Gene3D:3.40.50.410
GeneID:818482GO:GO:0008270Gramene:AT2G38970.1hmmpanther:PTHR10579
hmmpanther:PTHR10579:SF61InParanoid:F4IU12InterPro:IPR001841InterPro:IPR002035
InterPro:IPR013083InterPro:IPR032838KEGG:ath:AT2G38970OMA:SWQRATS
PaxDb:F4IU12Pfam:PF00092Pfam:PF13639Pfam:PF14624
Pfam:PF17123Pfscan:PS50089Pfscan:PS50234PRIDE:F4IU12
PROSITE:PS50089PROSITE:PS50234ProteinModelPortal:F4IU12Proteomes:UP000006548
RefSeq:NP_850306.1SMART:SM00184SMART:SM00327SMR:F4IU12
STRING:3702.AT2G38970.1SUPFAM:SSF53300SUPFAM:SSF57850TAIR:AT2G38970
UniGene:At.37223UniProt:F4IU12
Coordinates (TAIR10) chr2:+:16274135..16276651
Molecular Weight (calculated) 76355.50 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.29
Length 692 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)