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AT4G24970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27171361 (2016): nucleus nuclear matrix
  • PMID:27171361 (2016): nucleus nuclear matrix chromatin
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; FUNCTIONS IN: ATP binding; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (TAIR:AT5G50780.1); Has 769 Blast hits to 718 proteins in 131 species: Archae - 4; Bacteria - 82; Metazoa - 313; Fungi - 18; Plants - 223; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).
Protein Annotations
EC:3.6.-.-EMBL:AL035523EMBL:AL161562EMBL:CP002687
EnsemblPlants:AT4G24970EnsemblPlants:AT4G24970.1entrez:828599Gene3D:3.30.565.10
GeneID:828599GO:GO:0003677GO:GO:0003723GO:GO:0004519
GO:GO:0005524GO:GO:0005634GO:GO:0006281GO:GO:0006282
GO:GO:0016020GO:GO:0016301GO:GO:0016568GO:GO:0016887
GO:GO:0031047GO:GO:0031935GO:GO:0090305Gramene:AT4G24970.1
hmmpanther:PTHR23336hmmpanther:PTHR23336:SF7InParanoid:F4JRS4InterPro:IPR003594
iPTMnet:F4JRS4KEGG:ath:AT4G24970ncoils:CoilOMA:WDKNVET
Pfam:PF13589PIR:T05518PRIDE:F4JRS4ProteinModelPortal:F4JRS4
Proteomes:UP000006548RefSeq:NP_194227.2STRING:3702.AT4G24970.1SUPFAM:SSF55874
TAIR:AT4G24970UniGene:At.32306UniProt:F4JRS4
Coordinates (TAIR10) chr4:+:12831125..12835449
Molecular Weight (calculated) 79577.70 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.69
Length 707 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNSIHVKRE IQLPSTSPAG FPGRESVTVV DLCSSDDDSD IGEVAGGLEK VGNNFVGLKR GRDTFGGSSE VDRNNVKKVT TLAELGVGLP EGFGQSNPPE
101: SLTHPIPANP CNVFRPVPPP PPPPYAGTSG KIGGCKQFWK AGDYEGAAGD NWDLSSGGFD HVRVHPKFLH SNATSHKWAL GAFAELLDNA LDEVASGATY
201: VKVDMLENNK GGNRMLLIED NGGGMDPEKM RQCMSLGYSA KSKLANTIGQ YGNGFKTSTM RLGADVIVFS RCPGKDGKSS TQSIGLLSYT FLRSTGKEDI
301: VVPMLDYERR DPEWSKIIRS STRDWDKNVE TIIQWSPFSS EEDLLHQFDL MKDRGTRIII YNLWEDDQGM LELDFDADPY DIQLRGVNRE ERNIKMASQF
401: PNSRHFLTYK HSLRSYVSIL YLRIPPGFRI ILRGIDVEHH SVVNDMMQTE QITYRPQSES YGVVTNMSAI VIIGFVKDAK HHVDVQGFNV YHKNRLIKPF
501: WRIWNATGSD GRGVIGVLEA NFVEPAHDKQ GFERTTVLAR LESRLVQMQK TYWSTNCHKI GYAPRRREKS AYGYDNRDSS PENDREGPSS IKTPTPASDK
601: FYSSSYPNHN GDNGVSGKDG ARLQEELRRE KERRKALEVE VQLSRQKIEE MKKEQENLIE IFSEERDRRD GEEEVLRNKL EEASNTIDDL LNKIKKMEGS
701: KVPSWRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)