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AT1G74440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.969
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF962)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF962) (TAIR:AT1G18720.1); Has 608 Blast hits to 608 proteins in 290 species: Archae - 0; Bacteria - 318; Metazoa - 3; Fungi - 143; Plants - 86; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4539eggNOG:KOG3292EMBL:AC011765EMBL:CP002684
EnsemblPlants:AT1G74440EnsemblPlants:AT1G74440.1entrez:843785GeneID:843785
GO:GO:0016021Gramene:AT1G74440.1hmmpanther:PTHR28026hmmpanther:PTHR28026:SF4
HOGENOM:HOG000263779InterPro:IPR009305KEGG:ath:AT1G74440OMA:QAFLMGP
Pfam:PF06127PhylomeDB:Q9CA70PIR:C96773Proteomes:UP000006548
RefSeq:NP_177584.1STRING:3702.AT1G74440.1TAIR:AT1G74440TMHMM:TMhelix
UniGene:At.11890UniGene:At.34880UniProt:Q9CA70
Coordinates (TAIR10) chr1:-:27979208..27980371
Molecular Weight (calculated) 23446.00 Da
IEP (calculated) 9.38
GRAVY (calculated) 0.37
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNRIGLLDL EKHFAFYGAY HSNPINIIIH TLFVWPNVFA TLLFLYSTPP ILDHSQLGFL KSLTFDGVLR LDIGFTLTVT YAVFYICLDK KSGVLAALLC
101: FSCWIGSSFL AARLGHSLTL KVGVASQLLC WTGQFLGHGL FEKRAPALLD NLLQAFLMGP FFVLLEVLQS VFGYEPYPGF KARVDSKIES GIKEWREKKK
201: QQQMKKVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)