AT3G59570.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.982 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G43490.3); Has 3852 Blast hits to 3356 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 1970; Fungi - 763; Plants - 660; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:22001030..22005402 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81103.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.19 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||
| Length | 720 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSAGEGKKW TRRKAGLVSL QKVASLVRDL REPCLSQSRI QVVLTIGKML KPEKWQALFD GDGKVSSFHK ALKLIILGGI DPSIRAEVWE FLLGCYALSS 101: TSEYRTQLRV ARRERYNELL KQCQMMHSTV GTGSLAYVVG SKVMDMRKSY KNEVVKEDID ESREACLDGH ENTDNHGDWS NNDTEKSPVR RSGSSSESVD 201: LVSPDSTIYE TSSFVPPSSP YGFPSPGPFA DDIFDFPSLP VTDLFGRSSL GKKGLSTPDE ETSTQSDLRS EDERMHSFRI DKNADLVIEP HGSSYNDVTA 301: SINSEIEVVH LQSVEKLSHS VCTSEIVDGL RISDVPETPS ARETHTRGGT VKEDRVSEWL WTLHRIVVDV VRTDSHLEFY EDPGNLGRMS DILAVYAWVD 401: PATGYCQGMS DLVSPFVFLF EDNADAFWCF EMLIRRTRAN FQMEGPTGVM DQLQSLWRIL QLTDKEMFSH LSRIGAESLH FAFRMLLVLF RRELSFNKAL 501: RMWEMMWAAD FDESFAETLE KDCLKPLVVQ LPKRSGVDMG DHKIDDGNGT TTNSESTSKS DRTSKSSLLS KSGLLPESGP LPKTGPLSDD FGMKPAVSSC 601: GKGDDPLPVF CVAAILIMNR HKIMKETRSI DDMIKICNDK LLAIRVRRCI RTAIKLRKKY LYKNQVIKIE SHIQSQNHKH HEIQNQTAME NQIPEEITSH 701: DENCSQRPSL CNGPVMPLRE |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)