suba logo
AT5G61190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has 3024 Blast hits to 2428 proteins in 238 species: Archae - 10; Bacteria - 118; Metazoa - 1187; Fungi - 140; Plants - 554; Viruses - 10; Other Eukaryotes - 1005 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFUSeggNOG:ENOG410XQFXEMBL:CP002688EnsemblPlants:AT5G61190
EnsemblPlants:AT5G61190.1entrez:836240Gene3D:3.40.50.1010GeneID:836240
GO:GO:0003676GO:GO:0004519GO:GO:0005777GO:GO:0008270
GO:GO:0010468Gramene:AT5G61190.1hmmpanther:PTHR14379hmmpanther:PTHR14379:SF7
InParanoid:F4K209InterPro:IPR003604InterPro:IPR007087InterPro:IPR015880
InterPro:IPR021139InterPro:IPR024768InterPro:IPR029060KEGG:ath:AT5G61190
ncoils:CoilOMA:HTYGKKHPANTHER:PTHR14379PaxDb:F4K209
Pfam:PF01936Pfam:PF12874PRIDE:F4K209PROSITE:PS00028
ProteinModelPortal:F4K209Proteomes:UP000006548RefSeq:NP_200927.3scanprosite:PS00028
SMART:SM00355SMART:SM00451SUPFAM:SSF57667TAIR:AT5G61190
UniGene:At.23972UniProt:F4K209
Coordinates (TAIR10) chr5:+:24615480..24619886
Molecular Weight (calculated) 111102.00 Da
IEP (calculated) 7.38
GRAVY (calculated) -0.71
Length 995 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTAEADYVK AKTSVWWDIE NCEVPRGWDA HVIALNVSSS LLKMNYCGPV SISAYGDTNL IPLHHQQALS STGVALNHIP AGVKDASDKK ILVDMLLWAI
101: DNPAPANLLL ISGDRDFSNA LHQLRMRRYN ILLAQPPRAS VPLVAAARDV WLWTVLASGG PPLTSVESSL LFNNGGFRVS NKGVSKLPVS EQAQPSQPTG
201: STSNAGDTKD HKTREKHVPR GSLQENRKNM LQHSSGATGE SATTCRICNV VCDSFEKFTA HLSDIRHISQ AAIVESRRAQ ASVSAKPIHQ AVLVEPLLCK
301: VCQISFTNND TYKNHTYGKK HRNNLELQSG KSKNILVGPA EPSKEVLEKH NMNKKVMIES RAQANAEFVC LMCNVVCQSQ IVFNSHLRGK KHANMLSQSE
401: ALIVSTKLQE KGVGEKEQPS ETVAELQLQS QKAQEKQVLV DSKKLPEKGD EVKGQPKEMT ALRNASAKYI CRMCNVGCHS PIVFETHLRG QKHAANLNQS
501: KDQALIDSKK LQEKGFGEKE QPRETIVEPQ LQSQNAQENS KCFEKHVVMV NQSEVLINAS KLEEKDAQEK AQPIESIAEP QSQSQNTQEH TKFFEKQNEE
601: LRKICGTLES SVKEPLPSTK DWVETLNKQI PNGEFFFGDL RSDFEVPREA SECFDGIVKP VNLSKGETKH SWEAAFVASN GSQSSVSTNP LKEPEGLQPV
701: WCQVCQISCN SKVAFASHTY GKKHRQNLES QSAKNETMST GPGKLSKDYG EKTKKVSCKN QTTFDSQLKS QNHYTMAKEL VEKAFVSAFE HVSALEQFSI
801: VDSRTIREDT DQEKEATKEQ TLVKMDGNGF RGAPEDKVEL NQEKHREALE QFSIDSRIIR EETDQEKEAT EEQTLVKMDD LGFRGAPEDK VELKERHTVS
901: ENLVHRVFTE QNRESRIPNE PRGCLDVIPE RVKLPPNVNV AKNLEDEQKH KPEPKAQEAE NKSGGRKDLP GEAAKREEIK GQADNFWTRL WGKKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)