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AT3G54780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.974
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger (C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 4339 Blast hits to 4316 proteins in 749 species: Archae - 84; Bacteria - 1602; Metazoa - 1164; Fungi - 180; Plants - 555; Viruses - 5; Other Eukaryotes - 749 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2304eggNOG:ENOG410IGY0EMBL:CP002686EnsemblPlants:AT3G54780
EnsemblPlants:AT3G54780.1entrez:824643ExpressionAtlas:F4JE23Gene3D:3.30.40.10
Gene3D:3.40.50.410GeneID:824643GO:GO:0008270Gramene:AT3G54780.1
hmmpanther:PTHR10579hmmpanther:PTHR10579:SF61InParanoid:F4JE23InterPro:IPR001841
InterPro:IPR002035InterPro:IPR013083InterPro:IPR032838OMA:QTPSMAE
PaxDb:F4JE23Pfam:PF00092Pfam:PF13639Pfam:PF14624
Pfam:PF17123Pfscan:PS50089Pfscan:PS50234PRIDE:F4JE23
PROSITE:PS50089PROSITE:PS50234ProteinModelPortal:F4JE23Proteomes:UP000006548
RefSeq:NP_191038.2SMART:SM00184SMART:SM00327SMR:F4JE23
SUPFAM:SSF53300SUPFAM:SSF57850TAIR:AT3G54780UniGene:At.1218
UniGene:At.48768UniProt:F4JE23
Coordinates (TAIR10) chr3:+:20278985..20281429
Molecular Weight (calculated) 74718.60 Da
IEP (calculated) 7.39
GRAVY (calculated) -0.22
Length 675 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSKWKKMKL ALSLNLCNYL PRTLEEEPPS LALNSAETLS DAALLSPLNW PMTPTPSSYR RRLSRSSSKS SKTCSICLNK MKEGCGHAIF TAECSHMFHF
101: HCIASNVKHG NQVCPVCRAK WKEIPIQKPS LDLPYYPFDR CNNDAAISLF RCLPPSQRAI TQGHPEPATF DDDERLEEQI VFDGETEVLK KENRDYVRMM
201: DMKVYPEVSA VPQSKSCENF DVLVHLKAVT GDQISQYRRA PIDLVTVLDI SGSMGGTKLA LLKRAMGFVI QNLGSSDRLS VIAFSSTARR LFPLTRMSDA
301: GRQLALQAVN SLVANGGTNI VDGLRKGAKV MEDRLERNSV ASIILLSDGR DTYTTNHPDP SYKVMLPQIS VHSFGFGSDH DASVMHSVSE VSGGTFSFIE
401: SESVIQDALA QCIGGLLSVA VQELRVEIEG VSPNVRLSSI KAGSYSSLVT GDGHSGLVDL GDLYADEERD FLVSINIPVE EDGHTPLLKL RCLYINPLTK
501: EITTLESHVL QIRRPEYVAE EKVVPIEVVR QRNRFLAAEA MAQARTLAEH GDLEAAVKAI ENFRLVLAET VAAKSCDRFC VALDSELKEM QGRMRSSHMY
601: EASGRAYILS GLSSHSWQRA TARGNSRDSS SFVQAYQTPS MAEMLRRSQA MFLVSPSHHR LIQPLLSFAS QPKPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)