AT5G44160.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : C2H2-like zinc finger protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
nutcracker (NUC); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: primary root apical meristem, stem vascular system, embryo, root, embryonic root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G03840.1); Has 52823 Blast hits to 19358 proteins in 362 species: Archae - 0; Bacteria - 0; Metazoa - 50211; Fungi - 300; Plants - 764; Viruses - 0; Other Eukaryotes - 1548 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:17773091..17775513 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 51191.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.15 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 466 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTSEVLQTIS SGSGFAQPQS SSTLDHDESL INPPLVKKKR NLPGNPDPEA EVIALSPTTL MATNRFLCEV CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK 101: EVRKRVYVCP EKTCVHHHSS RALGDLTGIK KHFCRKHGEK KWTCEKCAKR YAVQSDWKAH SKTCGTREYR CDCGTIFSRR DSFITHRAFC DALAEETAKI 201: NAVSHLNGLA AAGAPGSVNL NYQYLMGTFI PPLQPFVPQP QTNPNHHHQH FQPPTSSSLS LWMGQDIAPP QPQPDYDWVF GNAKAASACI DNNNTHDEQI 301: TQNANASLTT TTTLSAPSLF SSDQPQNANA NSNVNMSATA LLQKAAEIGA TSTTTAATND PSTFLQSFPL KSTDQTTSYD SGEKFFALFG SNNNIGLMSR 401: SHDHQEIENA RNDVTVASAL DELQNYPWKR RRVDGGGEVG GGGQTRDFLG VGVQTLCHPS SINGWI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)