AT5G49660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat transmembrane protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT1G09970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20161401..20164534 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 107285.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 966 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRLKNFPFFV LFFFFCFNSN QSWGLMSSNQ QPQFFKLMKN SLFGDALSTW NVYDVGTNYC NFTGVRCDGQ GLVTDLDLSG LSLSGIFPDG VCSYFPNLRV 101: LRLSHNHLNK SSSFLNTIPN CSLLRDLNMS SVYLKGTLPD FSQMKSLRVI DMSWNHFTGS FPLSIFNLTD LEYLNFNENP ELDLWTLPDS VSKLTKLTHM 201: LLMTCMLHGN IPRSIGNLTS LVDLELSGNF LSGEIPKEIG NLSNLRQLEL YYNYHLTGSI PEEIGNLKNL TDIDISVSRL TGSIPDSICS LPNLRVLQLY 301: NNSLTGEIPK SLGNSKTLKI LSLYDNYLTG ELPPNLGSSS PMIALDVSEN RLSGPLPAHV CKSGKLLYFL VLQNRFTGSI PETYGSCKTL IRFRVASNRL 401: VGTIPQGVMS LPHVSIIDLA YNSLSGPIPN AIGNAWNLSE LFMQSNRISG VIPHELSHST NLVKLDLSNN QLSGPIPSEV GRLRKLNLLV LQGNHLDSSI 501: PDSLSNLKSL NVLDLSSNLL TGRIPENLSE LLPTSINFSS NRLSGPIPVS LIRGGLVESF SDNPNLCIPP TAGSSDLKFP MCQEPHGKKK LSSIWAILVS 601: VFILVLGVIM FYLRQRMSKN RAVIEQDETL ASSFFSYDVK SFHRISFDQR EILESLVDKN IVGHGGSGTV YRVELKSGEV VAVKKLWSQS NKDSASEDKM 701: HLNKELKTEV ETLGSIRHKN IVKLFSYFSS LDCSLLVYEY MPNGNLWDAL HKGFVHLEWR TRHQIAVGVA QGLAYLHHDL SPPIIHRDIK STNILLDVNY 801: QPKVADFGIA KVLQARGKDS TTTVMAGTYG YLAPEYAYSS KATIKCDVYS FGVVLMELIT GKKPVDSCFG ENKNIVNWVS TKIDTKEGLI ETLDKRLSES 901: SKADMINALR VAIRCTSRTP TIRPTMNEVV QLLIDATPQG GPDMTSKPTT KIKDSIVSDH LTQTRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)