AT1G79430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||
| Curator Summary (TAIR10) |
Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches. | ||||||||
| Computational Description (TAIR10) |
ALTERED PHLOEM DEVELOPMENT (APL); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G12730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29877521..29878850 | ||||||||
| Molecular Weight (calculated) | 32432.30 Da | ||||||||
| IEP (calculated) | 8.48 | ||||||||
| GRAVY (calculated) | -0.77 | ||||||||
| Length | 293 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MRVMGVKGLT LYHLKSHLQK FRLGKQPHKE YGDHSTKEGS RASAMDIQRN VASSSGMMSR NMNEMQMEVQ RRLHEQLEVQ RHLQLRIEAQ GKYMQSILER 101: ACQTLAGENM AAATAAAAVG GGYKGNLGSS SLSAAVGPPP HPLSFPPFQD LNIYGNTTDQ VLDHHNFHHQ NIENHFTGNN AADTNIYLGK KRPNPNFGND 201: VRKGLLMWSD QDHDLSANQS IDDEHRIQIQ MATHVSTDLD SLSEIYERKS GLSGDEGNNG GKLLERPSPR RSPLSPMMNP NGGLIQGRNS PFG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)