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AT5G54660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXBTeggNOG:ENOG410YHRUEMBL:AB016879EMBL:BT029496
EMBL:CP002688EnsemblPlants:AT5G54660EnsemblPlants:AT5G54660.1entrez:835555
Gene3D:2.60.40.790GeneID:835555Genevisible:Q9FIT9GO:GO:0005737
Gramene:AT5G54660.1hmmpanther:PTHR11527hmmpanther:PTHR11527:SF5HOGENOM:HOG000241522
InParanoid:Q9FIT9InterPro:IPR002068InterPro:IPR008978InterPro:IPR031107
KEGG:ath:AT5G54660OMA:IRIPKINPANTHER:PTHR11527PaxDb:Q9FIT9
Pfam:PF00011Pfam:Q9FIT9Pfscan:PS01031PhylomeDB:Q9FIT9
PRIDE:Q9FIT9PRO:PR:Q9FIT9PROSITE:PS01031ProteinModelPortal:Q9FIT9
Proteomes:UP000006548RefSeq:NP_568810.1STRING:3702.AT5G54660.1SUPFAM:SSF49764
TAIR:AT5G54660UniGene:At.29484UniProt:Q9FIT9
Coordinates (TAIR10) chr5:+:22203950..22204986
Molecular Weight (calculated) 21664.20 Da
IEP (calculated) 5.34
GRAVY (calculated) -0.50
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSSSGSLKL EIHTDDKTPG KWSVPLGDDV FRRFLSGGGG SEKAVFGEGS LFSPFLFGKY FDPSDAFPLW EFEAEVLLAS LRSLGQCRVD WSQTDQAYVL
101: KSDIPVVGKN NVQVYVDING RVMEISGQWN SNKKAATNSD WRSGRWWEHG YVRRLELPSD ADAKYSEAFL SNNDDYSFLE IRIPKINSKN KF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)