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AT1G07640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Dof-type zinc finger DNA-binding family protein
Curator
Summary (TAIR10)
A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis.
Computational
Description (TAIR10)
OBP2; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G28810.2); Has 1592 Blast hits to 1530 proteins in 87 species: Archae - 0; Bacteria - 4; Metazoa - 20; Fungi - 15; Plants - 1085; Viruses - 0; Other Eukaryotes - 468 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G07640EnsemblPlants:AT1G07640.1entrez:837277hmmpanther:PTHR31992
hmmpanther:PTHR31992:SF8Pfam:PF02701Pfscan:PS50884scanprosite:PS01361
tair10-symbols:OBP2
Coordinates (TAIR10) chr1:-:2354707..2355534
Molecular Weight (calculated) 29535.40 Da
IEP (calculated) 9.77
GRAVY (calculated) -0.70
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGSMAERAR QANIPPLAGP LKCPRCDSSN TKFCYYNNYN LTQPRHFCKG CRRYWTQGGA LRNVPVGGGC RRNNKKGKNG NLKSSSSSSK QSSSVNAQSP
101: SSGQLRTNHQ FPFSPTLYNL TQLGGIGLNL AATNGNNQAH QIGSSLMMSD LGFLHGRNTS TPMTGNIHEN NNNNNNENNL MASVGSLSPF ALFDPTTGLY
201: AFQNDGNIGN NVGISGSSTS MVDSRVYQTP PVKMEEQPNL ANLSRPVSGL TSPGNQTNQY FWPGSDFSGP SNDLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)