AT3G04030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-related protein 1 (TAIR:AT5G18240.2); Has 1677 Blast hits to 1670 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1656; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1042920..1044574 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43852.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||||||||||||||||||
| Length | 388 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYYQNQHQGK NILSSSRMHI TSERHPFLRG NSPGDSGLIL STDAKPRLKW TPDLHERFIE AVNQLGGADK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS 101: KNLNGQANNS FNKIGIMTMM EEKTPDADEI QSENLSIGPQ PNKNSPIGEA LQMQIEVQRR LHEQLELRIE AQGKYLQSVL EKAQETLGRQ NLGAAGIEAA 201: KVQLSELVSK VSAEYPNSSF LEPKELQNLC SQQMQTNYPP DCSLESCLTS SEGTQKNSKM LENNRLGLRT YIGDSTSEQK EIMEEPLFQR MELTWTEGLR 301: GNPYLSTMVS EAEQRISYSE RSPGRLSIGV GLHGHKSQHQ QGNNEDHKLE TRNRKGMDST TELDLNTHVE NYCTTRTKQF DLNGFSWN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)