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AT3G58720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G13430.3); Has 10692 Blast hits to 10666 proteins in 308 species: Archae - 0; Bacteria - 6; Metazoa - 2818; Fungi - 1012; Plants - 5122; Viruses - 94; Other Eukaryotes - 1640 (source: NCBI BLink).
Protein Annotations
EMBL:AL353032EMBL:CP002686EnsemblPlants:AT3G58720EnsemblPlants:AT3G58720.1
entrez:825041ExpressionAtlas:Q9LXS9Gene3D:3.30.40.10GeneID:825041
GO:GO:0008270Gramene:AT3G58720.1hmmpanther:PTHR22763HOGENOM:HOG000153163
InterPro:IPR001841InterPro:IPR013083Pfam:PF13639Pfscan:PS50089
PhylomeDB:Q9LXS9PIR:T49155PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_191431.1SMART:SM00184SMR:Q9LXS9SUPFAM:SSF57850
TAIR:AT3G58720UniProt:Q9LXS9
Coordinates (TAIR10) chr3:-:21716920..21717892
Molecular Weight (calculated) 27205.70 Da
IEP (calculated) 8.61
GRAVY (calculated) -0.56
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIPLFQINP IIVMIRIHDR RVGEFLLSLR GMLGLGVIQD LVPPSHTRHQ IPIRNSNNLR RQHLEALRQA VHNQSTRPES SSRSSSQTNE EDEILKHLTK
101: ETYNPVPKST LLRSLSLYYR NKNPGSESSR NTQNLSGEED DKRCSVCLED FEPKETVMLT PCKHMFHEEC IVPWLKTKGQ CPVCRFVILK PTKQDSSPPA
201: NGSNLTGDMT TNDLFTLELL SVVRAMEETF LFGNPRRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)