suba logo
AT2G23950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G30520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G23950-MONOMERBioGrid:2280EC:2.7.11.1eggNOG:ENOG410IGB7
eggNOG:ENOG410YEGZEMBL:AC005170EMBL:AK220652EMBL:AK226719
EMBL:CP002685EMBL:FJ708698EnsemblPlants:AT2G23950EnsemblPlants:AT2G23950.1
entrez:816928Gene3D:2.60.120.200Gene3D:3.80.10.10GeneID:816928
Genevisible:Q0WVM4GO:GO:0004674GO:GO:0005524GO:GO:0016021
Gramene:AT2G23950.1hmmpanther:PTHR27001hmmpanther:PTHR27001:SF144HOGENOM:HOG000116554
InParanoid:Q0WVM4InterPro:IPR000719InterPro:IPR001611InterPro:IPR008271
InterPro:IPR011009InterPro:IPR013210InterPro:IPR013320InterPro:IPR017441
InterPro:IPR032675KEGG:ath:AT2G23950OMA:RELHVATPaxDb:Q0WVM4
Pfam:PF00069Pfam:PF08263Pfam:PF13855Pfam:Q0WVM4
Pfscan:PS50011Pfscan:PS51450PhylomeDB:Q0WVM4PIR:G84630
PRIDE:Q0WVM4PRO:PR:Q0WVM4PROSITE:PS00107PROSITE:PS00108
PROSITE:PS50011PROSITE:PS51450ProteinModelPortal:Q0WVM4Proteomes:UP000006548
RefSeq:NP_179973.2scanprosite:PS00107scanprosite:PS00108SMART:SM00220
SMR:Q0WVM4SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT2G23950
TMHMM:TMhelixUniGene:At.39223UniProt:Q0WVM4
Coordinates (TAIR10) chr2:-:10187204..10189969
Molecular Weight (calculated) 69697.90 Da
IEP (calculated) 8.12
GRAVY (calculated) -0.09
Length 634 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVMKLITMK IFSVLLLLCF FVTCSLSSEP RNPEVEALIN IKNELHDPHG VFKNWDEFSV DPCSWTMISC SSDNLVIGLG APSQSLSGTL SGSIGNLTNL
101: RQVSLQNNNI SGKIPPEICS LPKLQTLDLS NNRFSGEIPG SVNQLSNLQY LRLNNNSLSG PFPASLSQIP HLSFLDLSYN NLRGPVPKFP ARTFNVAGNP
201: LICKNSLPEI CSGSISASPL SVSLRSSSGR RTNILAVALG VSLGFAVSVI LSLGFIWYRK KQRRLTMLRI SDKQEEGLLG LGNLRSFTFR ELHVATDGFS
301: SKSILGAGGF GNVYRGKFGD GTVVAVKRLK DVNGTSGNSQ FRTELEMISL AVHRNLLRLI GYCASSSERL LVYPYMSNGS VASRLKAKPA LDWNTRKKIA
401: IGAARGLFYL HEQCDPKIIH RDVKAANILL DEYFEAVVGD FGLAKLLNHE DSHVTTAVRG TVGHIAPEYL STGQSSEKTD VFGFGILLLE LITGMRALEF
501: GKSVSQKGAM LEWVRKLHKE MKVEELVDRE LGTTYDRIEV GEMLQVALLC TQFLPAHRPK MSEVVQMLEG DGLAERWAAS HDHSHFYHAN MSYRTITSTD
601: GNNQTKHLFG SSGFEDEDDN QALDSFAMEL SGPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)