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AT5G65240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22318864 (2012): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT5G10290.1); Has 171540 Blast hits to 120162 proteins in 4168 species: Archae - 111; Bacteria - 15580; Metazoa - 44244; Fungi - 8258; Plants - 84298; Viruses - 433; Other Eukaryotes - 18616 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G65240-MONOMERBioCyc:ARA:GQT-2130-MONOMEREC:2.7.11.1EMBL:AB013395
EMBL:AY059844EMBL:BT006309EMBL:CP002688EMBL:FJ708815
EnsemblPlants:AT5G65240EnsemblPlants:AT5G65240.1entrez:836649ExpressionAtlas:C0LGX1
Gene3D:2.60.120.200Gene3D:3.80.10.10GeneID:836649Genevisible:C0LGX1
GO:GO:0004674GO:GO:0005524GO:GO:0005886GO:GO:0016021
hmmpanther:PTHR27001hmmpanther:PTHR27001:SF33HOGENOM:HOG000116554InParanoid:C0LGX1
InterPro:IPR000719InterPro:IPR001611InterPro:IPR008271InterPro:IPR011009
InterPro:IPR013210InterPro:IPR013320InterPro:IPR017441InterPro:IPR032675
iPTMnet:C0LGX1PaxDb:C0LGX1Pfam:C0LGX1Pfam:PF00069
Pfam:PF08263Pfam:PF13855Pfscan:PS50011PhylomeDB:C0LGX1
PRIDE:C0LGX1PRO:PR:C0LGX1PROSITE:PS00107PROSITE:PS00108
PROSITE:PS50011ProteinModelPortal:C0LGX1Proteomes:UP000006548RefSeq:NP_201327.4
scanprosite:PS00107scanprosite:PS00108SMART:SM00220SMR:C0LGX1
SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT5G65240TMHMM:TMhelix
UniGene:At.26606UniProt:C0LGX1
Coordinates (TAIR10) chr5:-:26074980..26077650
Molecular Weight (calculated) 67722.10 Da
IEP (calculated) 5.04
GRAVY (calculated) -0.20
Length 607 amino acids
Sequence (TAIR10)
(BLAST)
001: MALLIITALV FSSLWSSVSP DAQGDALFAL RSSLRASPEQ LSDWNQNQVD PCTWSQVICD DKKHVTSVTL SYMNFSSGTL SSGIGILTTL KTLTLKGNGI
101: MGGIPESIGN LSSLTSLDLE DNHLTDRIPS TLGNLKNLQF LTLSRNNLNG SIPDSLTGLS KLINILLDSN NLSGEIPQSL FKIPKYNFTA NNLSCGGTFP
201: QPCVTESSPS GDSSSRKTGI IAGVVSGIAV ILLGFFFFFF CKDKHKGYKR DVFVDVAGEV DRRIAFGQLR RFAWRELQLA TDEFSEKNVL GQGGFGKVYK
301: GLLSDGTKVA VKRLTDFERP GGDEAFQREV EMISVAVHRN LLRLIGFCTT QTERLLVYPF MQNLSVAYCL REIKPGDPVL DWFRRKQIAL GAARGLEYLH
401: EHCNPKIIHR DVKAANVLLD EDFEAVVGDF GLAKLVDVRR TNVTTQVRGT MGHIAPECIS TGKSSEKTDV FGYGIMLLEL VTGQRAIDFS RLEEEDDVLL
501: LDHVKKLERE KRLEDIVDKK LDEDYIKEEV EMMIQVALLC TQAAPEERPA MSEVVRMLEG EGLAERWEEW QNLEVTRQEE FQRLQRRFDW GEDSINNQDA
601: IELSGGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)