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AT5G50780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27171361 (2016): nucleus nuclear matrix chromatin
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (TAIR:AT4G24970.1); Has 1155 Blast hits to 1113 proteins in 171 species: Archae - 12; Bacteria - 57; Metazoa - 490; Fungi - 74; Plants - 241; Viruses - 3; Other Eukaryotes - 278 (source: NCBI BLink).
Protein Annotations
EC:3.6.-.-eggNOG:NOG251808EMBL:AB023037EMBL:CP002688
EnsemblPlants:AT5G50780EnsemblPlants:AT5G50780.1entrez:835150Gene3D:3.30.565.10
GeneID:835150GO:GO:0003677GO:GO:0003723GO:GO:0004519
GO:GO:0005524GO:GO:0005634GO:GO:0006281GO:GO:0006282
GO:GO:0016301GO:GO:0016568GO:GO:0016887GO:GO:0031047
GO:GO:0031935GO:GO:0090305Gramene:AT5G50780.1hmmpanther:PTHR23336
hmmpanther:PTHR23336:SF7HOGENOM:HOG000243790InParanoid:F4KAF2InterPro:IPR003594
iPTMnet:F4KAF2KEGG:ath:AT5G50780ncoils:CoilOMA:ATPCNVV
Pfam:PF13589PRIDE:F4KAF2ProteinModelPortal:F4KAF2Proteomes:UP000006548
RefSeq:NP_199891.4STRING:3702.AT5G50780.1SUPFAM:SSF55874TAIR:AT5G50780
UniGene:At.29713UniProt:F4KAF2
Coordinates (TAIR10) chr5:+:20650269..20654948
Molecular Weight (calculated) 91930.30 Da
IEP (calculated) 7.46
GRAVY (calculated) -0.71
Length 819 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPIVKQENP VTTSTLSTWK PAARNKTIPP PESVIELSSS NEGSELGENL DEIAEIQSVD RTGGDDVSGT KRARSDSIAS PAKRLAVMIP DDDEEFLLST
101: TSGQAILALP ATPCNVVAAP SSWGSCKQFW KAGDYEGTSG GDWEVSAGGF DHVRVHPKFL HSNATSHKWS LGAFAELLDN ALDEVRSGAT FVNVDMIQNR
201: KDGSKMILIE DNGGGMNPEK MRHCMSLGYS AKSKLADTIG QYGNGFKTST MRLGADVIVF SRCLGKDGKS STQSIGLLSY TFLKSTGKED IVVPMLDYER
301: RDSEWCPITR SSVSDWEKNV ETVVQWSPYA TEEELLCQFN LMKKHGTRII IYNLWEDDEG MLELDFDTDP HDIQLRGVNR DDKNIVMASQ FPNSRHYLTY
401: KHSLRSYASI LYLKISHEFR IILRGKDVEH HNIVNDMMQT EKITYRPKEA ADGCAKYSNL YNLKIWLLVL HVSQLSAVVT IGFVKDAKHH VDVQGFNVYH
501: KNRLIKPFWR IWNAAGSDGR GVIGVLEANF VEPAHDKQGF ERTTVLSRLE ARLLHMQKDY WRSKCHKIGY AKRQGRKSAK DTEKDTEDRE SSPEFDPKGS
601: ASSRKRTVPS SFKTPTAAPR FNTPTAASEK FNPRSNVNGG GKGSVKVSKD IGYKSSEKGG KLGNSFSKSN KRAKPQGARA VEVTNSDDDY DCDSSPERNV
701: TELPGKSSEL PKPQSGPRTL SQLEQENNEL RERLDKKEEV FLLLQKDLRR ERELRKTLEA EVETLKNKLK EMDKEQASLI DVFAEDRDRR DKEEENLRIK
801: LEEASNTIQK LIDGKARGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)