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AT1G53590.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.537
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24030099 (2013): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NTMC2T6.1; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G14590.2); Has 5916 Blast hits to 4916 proteins in 346 species: Archae - 2; Bacteria - 105; Metazoa - 3154; Fungi - 722; Plants - 1160; Viruses - 7; Other Eukaryotes - 766 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5038eggNOG:KOG1012EMBL:AC018748EMBL:AC024260
EMBL:AY054685EMBL:CP002684EnsemblPlants:AT1G53590EnsemblPlants:AT1G53590.1
entrez:841794Gene3D:2.60.40.150GeneID:841794Genevisible:Q93XX4
GO:GO:0005773GO:GO:0005886GO:GO:0016021Gramene:AT1G53590.1
hmmpanther:PTHR10774hmmpanther:PTHR10774:SF80HOGENOM:HOG000239018InParanoid:Q93XX4
InterPro:IPR000008iPTMnet:Q93XX4KEGG:ath:AT1G53590OMA:TGRIHIA
PaxDb:Q93XX4Pfam:PF00168Pfam:Q93XX4Pfscan:PS50004
PIR:A96576PRIDE:Q93XX4PRO:PR:Q93XX4PROSITE:PS50004
ProteinModelPortal:Q93XX4Proteomes:UP000006548RefSeq:NP_564637.1SMART:SM00239
SMR:Q93XX4STRING:3702.AT1G53590.1SUPFAM:SSF49562TAIR:AT1G53590
tair10-symbols:NTMC2T6.1tair10-symbols:NTMC2TYPE6.1TMHMM:TMhelixUniGene:At.14917
UniProt:Q93XX4
Coordinates (TAIR10) chr1:+:19996556..20000127
Molecular Weight (calculated) 84906.10 Da
IEP (calculated) 5.81
GRAVY (calculated) -0.52
Length 751 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSLIHHII IVLLLLWFIS SLNRSHAFFY FLALIYLYLV HERYVMRLKR KLQFEERKQA NQRRVLSDSE SVRWMNYAVE KIWPICMEQI ASQKILGPII
101: PWFLEKYRPW TAKKAVIQHL YMGRNPPLLT DIRVLRQSTG DDHLVLELGM NFLAADDMSA ILAVKLRKRL GFGMWTKLHL TGMHVEGKVL IGVKFLRRWP
201: FLGRLRVCFA EPPYFQMTVK PIFTHGLDVA VLPGIAGWLD KLLSIAFEQT LVQPNMLVVD MEKFVSPTSE NWFFVDEKEP VAHVLVEVFE ASDLKPSDLN
301: GLADPYVKGK LGAYRFKTKI QKKTLSPKWH EEFKIPIFTW DSPSILNIEV GDKDRFVDDT LGECSVNIEE FRGGQRNDMW LSLQNIKMGR LHLAITVIED
401: NAKSSDDPLK KAKLNKEDIQ TSFASDTTNL GSFSSDKSPS VVDNFEPIKI DGQEETAIWV QKPGAEVSQI WEPRKGKSRR LDSQIQRTPN DESLSNGSSS
501: TDDNQEGSKN PMKSVGRGLR KIGSMFHRNV KKEEFLIGSI EEESQSQSPR INLKAVNQKD VGLNFIVDDN LSGPLSGKSL DGESLDAEEN SGKGHMKDVA
601: KSFLKQAEKS AKQIKHAFSR KGSMKPRDGH KEIVPESDSG TDSESSDDDD AFTCVKNLAT EPGKLTRDGN IERTGDDDHV DSTTLATAKE DSSGDILEDS
701: TDVEAKEEKL KEAAESETRD MDTAMNIKTE DEKGDTLKNI EEGEEKESSS K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)