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AT3G19340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3754)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3754 (InterPro:IPR022227); BEST Arabidopsis thaliana protein match is: aminopeptidases (TAIR:AT5G13940.1); Has 308 Blast hits to 303 proteins in 113 species: Archae - 0; Bacteria - 164; Metazoa - 10; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IET9eggNOG:ENOG41114E1EMBL:AY093193EMBL:CP002686
EnsemblPlants:AT3G19340EnsemblPlants:AT3G19340.1entrez:821468GeneID:821468
GO:GO:0005783GO:GO:0005886Gramene:AT3G19340.1hmmpanther:PTHR33645
hmmpanther:PTHR33645:SF3HOGENOM:HOG000005876InterPro:IPR022227KEGG:ath:AT3G19340
ncoils:CoilOMA:ICYYILMPfam:PF12576PhylomeDB:Q8RWC3
Proteomes:UP000006548RefSeq:NP_188565.1TAIR:AT3G19340UniGene:At.43813
UniProt:Q8RWC3
Coordinates (TAIR10) chr3:-:6701387..6704071
Molecular Weight (calculated) 56791.00 Da
IEP (calculated) 6.16
GRAVY (calculated) -0.31
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEQHNKEVI RLEPESVIPI LKPKLIMTLA NLIEHSNDRQ EFLKLCKRIE YTVRAWYLLQ FEDLMQLYSL FDPVHGAQKI QQQNLTSQEI DVLEQNFLAY
101: LFQVMEKSNF KITSNEEMEV AHSGQYLLNL PIKVDESKLD KKLLKRYFEE HPHENIPDFS DKYVIFRRGI GLDKTTDYFF MEKLDVIISR FWSFLMRITR
201: LEKLRAKRSS SLNKKDPKKD DEPNPDTDND ELYVERIRLE NSKLSFKSFL SKLTIQEPTF DRMIVVYRRA SSKTNLERGI YVKHFKNIPM ADMEIVLPEK
301: RNPGLTPMDW VKFLISAVVG LVAVLTSVEM PKSDPWVIIA ILSTVLGYCA KTYFTFQQNM ATYQNLITQS MYDKQLDSGR GTLLHLCDDV IQQEVKEVMI
401: CFYILMEQGK ATLEDLDLRC EELIKEEFGA RCNFDVEDAV QKLEKLGIVA RDTIGRYYCM GLKRANEIIG TTTEELVLKA KQGVTPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)