AT4G39150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNAJ heat shock N-terminal domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G21510.1); Has 22737 Blast hits to 22610 proteins in 3244 species: Archae - 169; Bacteria - 9228; Metazoa - 3910; Fungi - 2127; Plants - 2302; Viruses - 18; Other Eukaryotes - 4983 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18233651..18235740 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38463.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.69 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 345 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKESEYYDI LGVKIDASGA EIKKAYYVQA RQVHPDKNPG DPQAAKNFQI LGEAYQVLGD PEKRTAYDKY GKEGVQQDAM VDPAAVFGML FGSELFEDYV 101: GQLALASAAS IDAELESYEP EIRKQMLQEK IKAIQKDRVD KLVTTLKIKL EPFVEGQTDE FVNWATAEAK RLSTAGFGEA MLHTVGYIYT RKAAKELGKD 201: KRFMKVPFLA EWVRDKGHQV KSQVMAASGA VNLLLLQDEV SKLNQGENKE ENIQKAIEAK KDAMLQSLWQ INVVDIESTL SRVCQAVLKD PSVSKDVLRA 301: RARGLRKLGN VFQGSKKAYS RENSLRHEEE TGVKVHTGDS SKPAT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)