suba logo
AT5G55960.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
vacuole 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRXReggNOG:KOG2365EMBL:AY059863EMBL:BT003364
EMBL:CP002688EnsemblPlants:AT5G55960EnsemblPlants:AT5G55960.1entrez:835694
GeneID:835694GO:GO:0016021Gramene:AT5G55960.1hmmpanther:PTHR21716
hmmpanther:PTHR21716:SF4InterPro:IPR002549KEGG:ath:AT5G55960OMA:FPSAIEG
PANTHER:PTHR21716PhylomeDB:Q93XX1Proteomes:UP000006548RefSeq:NP_568833.1
TAIR:AT5G55960TMHMM:TMhelixUniGene:At.26758UniProt:Q93XX1
Coordinates (TAIR10) chr5:+:22662726..22664762
Molecular Weight (calculated) 71641.70 Da
IEP (calculated) 8.58
GRAVY (calculated) 0.36
Length 648 amino acids
Sequence (TAIR10)
(BLAST)
001: MELVPYDSET KSSIPTNLAW QEMFRSASSR KPQDPPSSSS SSPPRKPSGD GSSSKTSLST VDSQARLAMY IAMAHAGLAF AICVLYFVGK LLQEYLRPIQ
101: WAILCSIPLR GIQETLVDFW SEPLKLGLTE VVLAVPVSVF NVFIGSIVDI KNVCFRVFLR RSKPKRTRKK NDTGFSKLVK WLVSFGVFVI AYERIGGIGS
201: LVILSLGFLF SSKNVDSSLS AVSSLRSNSF RRSHFTAYFT RGIMTRLNTI VAIGLIVLMI VGSLTGVIFF SYKIGVEGKD AVYSLKSHVE ESNYAEKIGI
301: KQWMDENDVP GMVDMYTTKF YETVSEQIDS LAMQYNMTEL VTGIKHFVIG HPQNTSTPST ALITPSPYTE KLMSLRTRVK NREWSQIYSE VDVIFRELII
401: TREDLVEKAK GFAVKGMDVS QRVFSSSASV VGGGAKFVFS IGNLIISGAA EFFNFISQLM IFIWVLYILI TSESGGVTEQ VMNMLPINAS ARNRCVEVLD
501: LAISGVLLAT AEIAFFQGCL TWLLFRLYNI HFLYMSTVLA FISALLPIFP YWFATIPAAL QLVLEGRYIV AVILSVTHLV LMEYGASEIQ DDIPGSNAYL
601: TGLSIIGGVT LFPSALEGAI MGPLITTVVI ALKDLYAEFV LNEPKKIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)