suba logo
AT5G44410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.946
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-binding Berberine family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44440.1); Has 5072 Blast hits to 4970 proteins in 757 species: Archae - 49; Bacteria - 2261; Metazoa - 10; Fungi - 1748; Plants - 688; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G44410-MONOMEReggNOG:COG0277eggNOG:ENOG410IKHKEMBL:AB017065
EMBL:CP002688EnsemblPlants:AT5G44410EnsemblPlants:AT5G44410.1entrez:834467
Gene3D:3.30.43.10Gene3D:3.30.465.10GeneID:834467GO:GO:0016614
GO:GO:0050660Gramene:AT5G44410.1hmmpanther:PTHR32448hmmpanther:PTHR32448:SF30
HOGENOM:HOG000238933InterPro:IPR006093InterPro:IPR006094InterPro:IPR012951
InterPro:IPR016166InterPro:IPR016167InterPro:IPR016169KEGG:ath:AT5G44410
OMA:VANYWINPfam:PF01565Pfam:PF08031Pfscan:PS51387
PhylomeDB:Q9FI25PROSITE:PS00862PROSITE:PS51387Proteomes:UP000006548
RefSeq:NP_199254.1scanprosite:PS00862SMR:Q9FI25STRING:3702.AT5G44410.1
SUPFAM:SSF56176TAIR:AT5G44410TMHMM:TMhelixUniGene:At.30077
UniProt:Q9FI25
Coordinates (TAIR10) chr5:-:17891246..17892853
Molecular Weight (calculated) 61276.90 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.21
Length 535 amino acids
Sequence (TAIR10)
(BLAST)
001: MEILRFLLSL FIYFLLLNLS LSHFPSISAQ RTNHENFLKC LSHRINEDDS RIIHTSKDPS YFSILNSSIQ NPRFFVLETP KPVSIITPVQ ATDVQSTIKC
101: ARLHGIHIRT RSGGHDYEGL SYMAKSRPFV VIDLRNLRSI TLDVDNRTGW VQSGATIGEL YYEIGKLSKS LAFPAGLYPT VGIGGQFGGG GYGTLMRKYG
201: LSADNVIDAH IVDANGSFLD RQGMGEDFFW AIRGGGGSSF SVVLSWKIRL LDVPSVVTVF KVVKTSEKEA VSIINKWQYI ADKVPNDLFI RAMLQKETEV
301: YASFPGLYLG PVSDLLALMK DKFPELGLEI GNCREMSWIE SVLWFIKGES MEILAKRKRT SRSFKGKDDF IEEPIPKTAI QYLWRRFEAP EARLAKIILT
401: PFGGKMSEIA DNEIPFPHRE GNLYEIQYLA YWSEEEDKNK TNTEKYLRWV ESVYEFMTPY VSKSPRRAYV NFRDIDLGMY LGLNMKTKYE EAKVWGVKYF
501: KNNFDRLVRV KTNVDPMDFF CDEQSIPIMK YVNDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)