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AT2G15310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.963
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30439956 (2018): Golgi trans-Golgi network
  • PMID:30439956 (2018): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ADP-ribosylation factor B1A
Curator
Summary (TAIR10)
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins.
Computational
Description (TAIR10)
ADP-ribosylation factor B1A (ARFB1A); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor A1F (TAIR:AT1G10630.1); Has 16727 Blast hits to 16719 proteins in 560 species: Archae - 15; Bacteria - 32; Metazoa - 8664; Fungi - 2207; Plants - 2295; Viruses - 3; Other Eukaryotes - 3511 (source: NCBI BLink).
Protein Annotations
BioGrid:1379eggNOG:COG1100eggNOG:KOG0070EMBL:AC007267
EMBL:AY054470EMBL:AY093273EMBL:CP002685EnsemblPlants:AT2G15310
EnsemblPlants:AT2G15310.1entrez:816020Gene3D:3.40.50.300GeneID:816020
Genevisible:Q9SHU5GO:GO:0005525GO:GO:0005794GO:GO:0007264
GO:GO:0015031GO:GO:0016192Gramene:AT2G15310.1hmmpanther:PTHR11711
hmmpanther:PTHR11711:SF184HOGENOM:HOG000163691InParanoid:Q9SHU5IntAct:Q9SHU5
InterPro:IPR005225InterPro:IPR006689InterPro:IPR024156InterPro:IPR027417
iPTMnet:Q9SHU5KEGG:ath:AT2G15310KO:K07977OMA:CVLVFAN
PaxDb:Q9SHU5Pfam:PF00025Pfam:Q9SHU5Pfscan:PS51417
PhylomeDB:Q9SHU5PIR:D84527PRIDE:Q9SHU5PRINTS:PR00328
PRO:PR:Q9SHU5PROSITE:PS51417ProteinModelPortal:Q9SHU5Proteomes:UP000006548
RefSeq:NP_179133.1SMR:Q9SHU5STRING:3702.AT2G15310.1SUPFAM:SSF52540
TAIR:AT2G15310tair10-symbols:ARFB1Atair10-symbols:ATARFB1ATIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.26479UniProt:Q9SHU5
Coordinates (TAIR10) chr2:+:6653947..6655187
Molecular Weight (calculated) 23081.80 Da
IEP (calculated) 10.18
GRAVY (calculated) -0.29
Length 205 amino acids
Sequence (TAIR10)
(BLAST)
001: MGARFSRIAK RFLPKSKVRI LMVGLDGSGK TTILYKLKLG EVVTTVPTIG FNLETVEYKG INFTVWDIGG QEKIRKLWRH YFQNAQGLIF VVDSSDSERL
101: SEARNELHRI LTDNELEGAC VLVFANKQDS RNALPVAEVA NKLGLHSLSK RCWLIQGTSA ISGQGLYEGL EWLSTTIPNK PERSTSVSSF RSDSYERKLV
201: RGPRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)