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AT2G39830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DA1-related protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DA1-related protein 2 (DAR2); FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT4G36860.1); Has 1539 Blast hits to 1276 proteins in 109 species: Archae - 0; Bacteria - 10; Metazoa - 1178; Fungi - 26; Plants - 170; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).
Protein Annotations
BioGrid:3908eggNOG:ENOG410XRD4eggNOG:KOG1703EMBL:AC003000
EMBL:AK227895EMBL:CP002685EnsemblPlants:AT2G39830EnsemblPlants:AT2G39830.1
entrez:818570Gene3D:2.10.110.10GeneID:818570Genevisible:Q0WSN2
GO:GO:0008270GO:GO:0010088GO:GO:0043130GO:GO:0048364
Gramene:AT2G39830.1hmmpanther:PTHR24209hmmpanther:PTHR24209:SF7HOGENOM:HOG000239946
InParanoid:Q0WSN2InterPro:IPR001781InterPro:IPR022087KEGG:ath:AT2G39830
ncoils:CoilOMA:RHPIRETPaxDb:Q0WSN2Pfam:PF00412
Pfam:PF12315Pfam:Q0WSN2Pfscan:PS50023PhylomeDB:Q0WSN2
PIR:T01013PRIDE:Q0WSN2PRO:PR:Q0WSN2PROSITE:PS00142
PROSITE:PS00478PROSITE:PS50023ProteinModelPortal:Q0WSN2Proteomes:UP000006548
RefSeq:NP_181513.3scanprosite:PS00478SMART:SM00132SMR:Q0WSN2
STRING:3702.AT2G39830.1SUPFAM:SSF57716TAIR:AT2G39830tair10-symbols:DAR2
UniGene:At.37124UniProt:Q0WSN2
Coordinates (TAIR10) chr2:-:16619950..16623658
Molecular Weight (calculated) 59429.20 Da
IEP (calculated) 8.00
GRAVY (calculated) -0.58
Length 528 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSSSSSSS SPSSSYGVAR VSHISNPCIF GEVGSSSSST YRDKKWKLMK WVSKLFKSGS NGGGSGAHTN HHPPQFQEDE NMVFPLPPSS LDDRSRGARD
101: KEELDRSISL SLADNTKRPH GYGWSMDNNR DFPRPFHGGL NPSSFIPPYE PSYQYRRRQR ICGGCNSDIG SGNYLGCMGT FFHPECFRCH SCGYAITEHE
201: FSLSGTKPYH KLCFKELTHP KCEVCHHFIP TNDAGLIEYR CHPFWNQKYC PSHEYDKTAR CCSCERLESW DVRYYTLEDG RSLCLECMET AITDTGECQP
301: LYHAIRDYYE GMYMKLDQQI PMLLVQREAL NDAIVGEKNG YHHMPETRGL CLSEEQTVTS VLRRPRLGAH RLVGMRTQPQ RLTRKCEVTA ILVLYGLPRL
401: LTGAILAHEL MHGWLRLNGF RNLNPEVEEG ICQVLSYMWL ESEVLSDPST RNLPSTSSVA TSSSSSFSNK KGGKSNVEKK LGEFFKHQIA HDASPAYGGG
501: FRAANAAACK YGLRRTLDHI RLTGTFPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)