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AT2G01660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 18215111
SwissProt : extracellular 16381842
TAIR : plasma membrane 18215111
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plasmodesmata-located protein 6
Curator
Summary (TAIR10)
Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
Computational
Description (TAIR10)
plasmodesmata-located protein 6 (PDLP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 7 (TAIR:AT5G37660.2); Has 1458 Blast hits to 1310 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:98eggNOG:ENOG410IWDMeggNOG:ENOG410YCA0EMBL:AC006069
EMBL:AK227616EMBL:AY062817EMBL:AY086022EMBL:BT006314
EMBL:CP002685EnsemblPlants:AT2G01660EnsemblPlants:AT2G01660.1EnsemblPlants:AT2G01660.2
entrez:814695ExpressionAtlas:Q9ZU94GeneID:814695Genevisible:Q9ZU94
GO:GO:0006810GO:GO:0009506GO:GO:0016021GO:GO:0016032
hmmpanther:PTHR32080hmmpanther:PTHR32080:SF3HOGENOM:HOG000239304InParanoid:Q9ZU94
InterPro:IPR002902iPTMnet:Q9ZU94KEGG:ath:AT2G01660OMA:TTYNNFT
PaxDb:Q9ZU94Pfam:PF01657Pfam:Q9ZU94Pfscan:PS51473
PhylomeDB:Q9ZU94PIR:E84427PRIDE:Q9ZU94PRO:PR:Q9ZU94
PROSITE:PS51473ProteinModelPortal:Q9ZU94Proteomes:UP000006548RefSeq:NP_565272.1
RefSeq:NP_973394.1SMR:Q9ZU94STRING:3702.AT2G01660.1TAIR:AT2G01660
tair10-symbols:PDLP6TCDB:1.I.2.1.1TMHMM:TMhelixUniGene:At.27223
UniProt:Q9ZU94
Coordinates (TAIR10) chr2:-:290973..292496
Molecular Weight (calculated) 30205.60 Da
IEP (calculated) 5.98
GRAVY (calculated) 0.02
Length 288 amino acids
Sequence (TAIR10)
(BLAST)
001: MFATKTVLFI AVVSLLGTFS SAAVDTFIYG GCSQEKYFPG SPYESNVNSL LTSFVSSASL YTYNNFTTNG ISGDSSSVYG LYQCRGDLSS GSGDCARCVA
101: RAVSRLGSLC AMASGGALQL EGCFVKYDNT TFLGVEDKTV VVRRCGPPVG YNSDEMTRRD SVVGSLAASS GGSYRVGVSG ELQGVAQCTG DLSATECQDC
201: LMEAIGRLRT DCGGAAWGDV YLAKCYARYS ARGGHSRANG YGGNRNNNDD DEIEKTLAII VGLIAGVTLL VVFLSFMAKS CERGKGGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)