AT5G18370.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.992 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, inflorescence meristem, hypocotyl, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G18350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:6085036..6088926 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 137794.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.00 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1210 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAIAEVIGFF TLVCVIWYWV YKKHKNLQLK ICRSSIESSS SSSSLSSPPS LSSPISRTWT HQVFPSFRGE DVRKGFLSHI QKEFKSKGIV PFIDDEMKRG 0101: ESIGPGLFQA IRESKIAIVL LSKNYASSSW CLNELVEIMN CREEIGQTVM TVFYQVDPSD VRKQTGDFGK AFKKTCVGKT QEVKQRWSRA LMDVANILGQ 0201: DSRKWDKEAD MIVKVAKDVS DVLSYTPSRD FDDYVGIRPH ITRINSLLCL ESSDVRMIGI LGPPGIGKTT IARVLYDQIS EKFQFSAFIE NIRLSYWKGW 0301: HDEGNLDFPV EIMTGDRQRK LNLQRRLLSE LFNQKDIQVR HLGAVQERLR DHKVLVILDG VDQLEQLTAL AKETQWFGYG SRIIITTQDQ RLLRAHEINH 0401: VYKVDLPATD EALQIFCLYA FGQKFPYDGF KKLAREFTAL AGELPLGLRV LGSYLRGMSL EEWKNALPRL RTSLDGEIEK TLRFAYNVLS DKDKSLFLHI 0501: ACLFNGCQVN HVKQWLANSS LDVNHGFEVL SNKSLISTDM GLVRMHSLLQ QLGVDIVRKQ SIGEPEKRQF LVDVNEISDV ITDNTGTGTI LGIMLHVSKI 0601: EDVLVIEETV FDRMTNLQFL ILDECLRDKL NLPLGLNCLP RKIRLLRWDY CPLSIWPSKF SAKFLVELIM RANKFEKLWE GIQPLKNLKR MELGDARNLK 0701: EIPDLSNATN LESLLLSFCT SLLEIPSSIR GTTNLKELDL GGCASLVKLS SCICNATSLE ELNLSACSNL VELPCALPGD SNMRSLSKLL LNGSSRLKTF 0801: PEISTNIQEL NLSGTAIEEV PSSIRLWSRL DKLDMSRCKN LKMFPPVPDG ISVLNLSETE IEDIPPWVEN LSQLRHFVMI RCKKLDNISL SRISKMEGVH 0901: CLQITRGDED VSGDSIVNIR WYSNFPNQWT LQSDMLQICL PELVYTSPVS LHFISNEFKT IPDCIKNLSQ LHQLSFYRCH KLVSLPQLSD CLSSLDAENC 1001: VSLETIDGSF HNPDIRLNFL NCNNLNQEAR ELIQKSVCKH ALLPSGEVPA YFIHRAIGDS VTIHLKERHL PLYLIFKASL VLFNDDEINY DYDDDDDDDY 1101: DEEVIVYGDY DSYPHSDDYT KQETMRLSCR VEGKQNGLTI QYGSSVHLLP TPHRYTEHVY IFEASFSLGE CNSPEAESEL VFDFKVHDYF WAIKECGLRL 1201: LELPHAHGDD |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)