AT5G18360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.960 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G17970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6080049..6083027 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102295.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 900 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEESSSLSLQ SCNWRHHVFP SFSGKDVRRT FLSHLLKEFR RKGIRTFIDN DIKRSQMISS ELVRAIRESR IAVVVLSRTY ASSSWCLNEL VEIKKVSQMI 101: MPVFYEVDPS DVRKRTGEFG KAFEEACERQ PDEEVKQKWR EALVYIANIA GESSQNWDNE ADLIDKIAMS ISYELNSTLS RDSYNLVGID NHMRELDSLL 201: CLESTEVKMV GIWGPAGIGK TTIARALFNR LSENFQHTIF MENVKGSSRT SELDAYGFQL RLQEQFLSEV IDHKHMKIHD LGLVKERLQD LKVLVVLDDV 301: DKLEQLDALV KQSQWFGSGS RIIVTTENKQ LLRAHGITCI YELGFPSRSD SLQIFCQYAF GESSAPDGCI ELATEITKLA GYLPLALKVL GSSLRGMSKD 401: EQKSALPRLR TSLNEDIRNV LRVGYDGIHD KDKVIFLHIA CLFNGENVDY VKQILASSGL DVTFGLQVLT SRSLIHISRC NRTITMHNLL EQLGREIVCE 501: QSIAEPGKRQ FLMDASEIYD VLADNTGTGA VLGISLDISK INELFLNERA FGGMHNLLFL RFYKSSSSKD QPELHLPRGL DYLPRKLRLL HWDAFPMTSM 601: PLSFCPQFLV VINIRESQLE KLWEGTQPLR SLKQMDLSKS ENLKEIPDLS KAVNIEELCL SYCGSLVMLP SSIKNLNKLV VLDMKYCSKL EIIPCNMDLE 701: SLSILNLDGC SRLESFPEIS SKIGFLSLSE TAIEEIPTTV ASWPCLAALD MSGCKNLKTF PCLPKTIEWL DLSRTEIEEV PLWIDKLSKL NKLLMNSCMK 801: LRSISSGIST LEHIKTLDFL GCKNIVSFPV EIFESSRFCH NLVMEMRNIQ NPDLPRPFYF KNNYIDTIPD CITRHCKLPF LNSSGSISSK IENDFIWFDK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)