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AT3G04110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glutamate receptor 1.1
Curator
Summary (TAIR10)
putative glutamate receptor (GLR1.1). Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.
Computational
Description (TAIR10)
glutamate receptor 1.1 (GLR1.1); FUNCTIONS IN: intracellular ligand-gated ion channel activity, cation channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus, cellular cation homeostasis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 1.3 (TAIR:AT5G48410.1); Has 3355 Blast hits to 3282 proteins in 359 species: Archae - 20; Bacteria - 507; Metazoa - 2116; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Protein Annotations
BioGrid:4901eggNOG:ENOG410ISR3eggNOG:ENOG410XPSHEMBL:AC016829
EMBL:AF079998EMBL:AK117584EMBL:CP002686EnsemblPlants:AT3G04110
EnsemblPlants:AT3G04110.1entrez:819566GeneID:819566Genevisible:Q9M8W7
GO:GO:0004970GO:GO:0005261GO:GO:0005262GO:GO:0005267
GO:GO:0005272GO:GO:0005622GO:GO:0005886GO:GO:0006813
GO:GO:0006814GO:GO:0006816GO:GO:0008066GO:GO:0009737
GO:GO:0009738GO:GO:0016021GO:GO:0019722GO:GO:0030003
GO:GO:0035725GO:GO:0070588GO:GO:0071230GO:GO:0071805
GO:GO:0098655Gramene:AT3G04110.1hmmpanther:PTHR18966hmmpanther:PTHR18966:SF117
HOGENOM:HOG000239558InParanoid:Q9M8W7InterPro:IPR001320InterPro:IPR001638
InterPro:IPR001828InterPro:IPR017103InterPro:IPR028082KEGG:ath:AT3G04110
KO:K05387OMA:YEDADDWPaxDb:Q9M8W7Pfam:PF00060
Pfam:PF00497Pfam:PF01094Pfam:Q9M8W7PhylomeDB:Q9M8W7
PIR:T51138PIRSF:PIRSF037090PRIDE:Q9M8W7PRO:PR:Q9M8W7
ProteinModelPortal:Q9M8W7Proteomes:UP000006548RefSeq:NP_187061.1SMART:SM00079
SMR:Q9M8W7STRING:3702.AT3G04110.1SUPFAM:SSF53822SUPFAM:SSF53850
TAIR:AT3G04110tair10-symbols:ATGLR1.1tair10-symbols:GLR1tair10-symbols:GLR1.1
TCDB:1.A.10.1.7TMHMM:TMhelixUniGene:At.18800UniProt:Q9M8W7
Coordinates (TAIR10) chr3:+:1077361..1080236
Molecular Weight (calculated) 90514.20 Da
IEP (calculated) 8.82
GRAVY (calculated) 0.01
Length 808 amino acids
Sequence (TAIR10)
(BLAST)
001: MEILFSISIL ALLFSGVVAA PSDDDVFEEV RVGLVVDLSS IQGKILETSF NLALSDFYGI NNGYRTRVSV LVRDSQGDPI IALAAATDLL KNAKAEAIVG
101: AQSLQEAKLL ATISEKAKVP VISTFLPNTL SLKKYDNFIQ WTHDTTSEAK GITSLIQDFS CKSVVVIYED ADDWSESLQI LVENFQDKGI YIARSASFAV
201: SSSGENHMMN QLRKLKVSRA SVFVVHMSEI LVSRLFQCVE KLGLMEEAFA WILTARTMNY LEHFAITRSM QGVIGFKSYI PVSEEVKNFT SRLRKRMGDD
301: TETEHSSVII GLRAHDIACI LANAVEKFSV SGKVEASSNV SADLLDTIRH SRFKGLSGDI QISDNKFISE TFEIVNIGRE KQRRIGLWSG GSFSQRRQIV
401: WPGRSRKIPR HRVLAEKGEK KVLRVLVTAG NKVPHLVSVR PDPETGVNTV SGFCVEVFKT CIAPFNYELE FIPYRGNNDN LAYLLSTQRD KYDAAVGDIT
501: ITSNRSLYVD FTLPYTDIGI GILTVKKKSQ GMWTFFDPFE KSLWLASGAF FVLTGIVVWL VERSVNPEFQ GSWGQQLSMM LWFGFSTIVF AHREKLQKMS
601: SRFLVIVWVF VVLILTSSYS ANLTSTKTIS RMQLNHQMVF GGSTTSMTAK LGSINAVEAY AQLLRDGTLN HVINEIPYLS ILIGNYPNDF VMTDRVTNTN
701: GFGFMFQKGS DLVPKVSREI AKLRSLGMLK DMEKKWFQKL DSLNVHSNTE EVASTNDDDE ASKRFTFREL RGLFIIAGAA HVLVLALHLF HTRQEVSRLC
801: TKLQSFYK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)