suba logo
AT4G12950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Fasciclin-like arabinogalactan family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Fasciclin-like arabinogalactan family protein; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29980.1); Has 48 Blast hits to 47 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:826907eggNOG:ENOG410JXCGeggNOG:ENOG411043EEMBL:AL079349
EMBL:AL161535EMBL:CP002687EMBL:DQ446828EnsemblPlants:AT4G12950
EnsemblPlants:AT4G12950.1entrez:826907Gene3D:2.30.180.10GeneID:826907
GO:GO:0031225Gramene:AT4G12950.1hmmpanther:PTHR33985hmmpanther:PTHR33985:SF3
InterPro:IPR000782KEGG:ath:AT4G12950OMA:SHTIDETPfscan:PS50213
PhylomeDB:Q9SV74PIR:T10197PROSITE:PS50213Proteomes:UP000006548
RefSeq:NP_193031.1SMART:SM00554STRING:3702.AT4G12950.1SUPFAM:SSF82153
TAIR:AT4G12950UniGene:At.51019UniProt:Q9SV74
Coordinates (TAIR10) chr4:+:7576642..7577172
Molecular Weight (calculated) 19614.60 Da
IEP (calculated) 4.89
GRAVY (calculated) 0.41
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLLLFFLLS TVSVFAVVSG TVEETARDVI DALAHAPFEE WSSVFIETND RIRAEVIPST LFIPNSSANG SDDRHKLASY HIVPQRLEFA DLLLKPSRSR
101: LPTLLNGSSI LVTNNSATSF SIDGVLIIEL DIYVDSFIAI HRIAYPLDYT TYGGGSKLIS KWPLFTFMLV TVVWFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)