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AT2G13290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.817
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-1,4-N-acetylglucosaminyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
beta-1,4-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: beta-1,4-N-acetylglucosaminyltransferase family protein (TAIR:AT1G12990.1); Has 1150 Blast hits to 1147 proteins in 93 species: Archae - 0; Bacteria - 44; Metazoa - 57; Fungi - 35; Plants - 130; Viruses - 4; Other Eukaryotes - 880 (source: NCBI BLink).
Protein Annotations
CAZy:GT17eggNOG:ENOG410IEQJeggNOG:ENOG410YQKPEMBL:AC006446
EMBL:BT004221EMBL:BT005063EMBL:CP002685EMBL:KJ138916
EnsemblPlants:AT2G13290EnsemblPlants:AT2G13290.1EnsemblPlants:AT2G13290.2entrez:815815
GeneID:815815GO:GO:0003830GO:GO:0006487GO:GO:0016021
Gramene:AT2G13290.1Gramene:AT2G13290.2hmmpanther:PTHR12224hmmpanther:PTHR12224:SF1
HOGENOM:HOG000239213InterPro:IPR006813InterPro:IPR029044KEGG:00510+2.4.1.144
KEGG:ath:AT2G13290KO:K00737OMA:KGYSHADPANTHER:PTHR12224
Pfam:PF04724PhylomeDB:Q9SKF0PIR:E84506PRO:PR:Q9SKF0
Proteomes:UP000006548Reactome:R-ATH-975574RefSeq:NP_178963.1RefSeq:NP_973449.1
STRING:3702.AT2G13290.1SUPFAM:SSF53448TAIR:AT2G13290TMHMM:TMhelix
UniGene:At.13898unipathway:UPA00378UniProt:Q9SKF0
Coordinates (TAIR10) chr2:+:5512058..5513143
Molecular Weight (calculated) 42313.40 Da
IEP (calculated) 8.69
GRAVY (calculated) -0.23
Length 361 amino acids
Sequence (TAIR10)
(BLAST)
001: MTIRSLRKPP PVKLVFPTLI ILFLTCLLCI LTNFQTISYL FRPLWDKPPP PFKRIPHYYA ENVSMGHLCE LHGWTPRLEP RRVFDAIIFS NELDLLEVRW
101: RELEPYVSKF VILESNTTFT GIPKPLFFDS NKERFAFAEG KIVHGVFPGK KRSTGQPYED PFLLEGQQRV AMNWLLREAG VSDGDAVIMS DADEIPSPHT
201: VKFLQWCDGI PDVMHLEMRE YMYSFEFPVD YSSWRASVHI YSRKWTQYRH SRQTDLILSD AGWHCSFCFR RLNEFVFKMK GYSHADRVKR KEFLDYQRIQ
301: KHICKGYDLF DMLPEKYSFQ ELISKIGPIP PSASAVHLPA FLIQNAARFR FLLPGGCLRE P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)