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AT4G12300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome P450, family 706, subfamily A, polypeptide 4
Curator
Summary (TAIR10)
member of CYP706A
Computational
Description (TAIR10)
cytochrome P450, family 706, subfamily A, polypeptide 4 (CYP706A4); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 706, subfamily A, polypeptide 6 (TAIR:AT4G12320.1); Has 33926 Blast hits to 33601 proteins in 1707 species: Archae - 58; Bacteria - 3741; Metazoa - 11926; Fungi - 7434; Plants - 9483; Viruses - 3; Other Eukaryotes - 1281 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G12300-MONOMEReggNOG:COG2124eggNOG:KOG0156EMBL:AK118782
EMBL:AL080318EMBL:AL161533EMBL:BT005454EMBL:CP002687
EnsemblPlants:AT4G12300EnsemblPlants:AT4G12300.1entrez:826839Gene3D:1.10.630.10
GeneID:826839GO:GO:0005506GO:GO:0016020GO:GO:0016021
GO:GO:0016709GO:GO:0020037GO:GO:0044550Gramene:AT4G12300.1
hmmpanther:PTHR24298hmmpanther:PTHR24298:SF114HOGENOM:HOG000218628InterPro:IPR001128
InterPro:IPR002401InterPro:IPR017972KEGG:ath:AT4G12300ncoils:Coil
OMA:FPDNTINPfam:PF00067PhylomeDB:Q9STI1PIR:T48140
PRINTS:PR00385PRINTS:PR00463PROSITE:PS00086Proteomes:UP000006548
RefSeq:NP_192967.1scanprosite:PS00086SMR:Q9STI1STRING:3702.AT4G12300.1
SUPFAM:SSF48264TAIR:AT4G12300tair10-symbols:CYP706A4TMHMM:TMhelix
UniGene:At.23823UniProt:Q9STI1
Coordinates (TAIR10) chr4:-:7308016..7309692
Molecular Weight (calculated) 58662.30 Da
IEP (calculated) 6.73
GRAVY (calculated) -0.14
Length 516 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPISNLFPD NTINLTPYAI VILTTVFSIL WYIFKRSPQP SLPPGPRGLP IVGNLPFLDP DLHTYFANLA QSHGPIFKLN LGSKLTIVVN SPSLAREILK
101: DQDINFSNRD VPLTGRAATY GGIDIVWTPY GAEWRQLRKI CVLKLLSRKT LDSFYELRRK EVRERTRYLY EQGRKQSPVK VGDQLFLTMM NLTMNMLWGG
201: SVKAEEMESV GTEFKGVISE ITRLLSEPNV SDFFPWLARF DLQGLVKRMG VCARELDAVL DRAIEQMKPL RGRDDDEVKD FLQYLMKLKD QEGDSEVPIT
301: INHVKALLTD MVVGGTDTST NTIEFAMAEL MSNPELIKRA QEELDEVVGK DNIVEESHIT RLPYILAIMK ETLRLHPTLP LLVPHRPAEN TVVGGYTIPK
401: DTKIFVNVWS IQRDPNVWEN PTEFRPERFL DNNSCDFTGA NYSYFPFGSG RRICAGVALA ERMVLYTLAT LLHSFDWKIP EGHVLDLKEK FGIVLKLKIP
501: LVALPIPRFS DSNLYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)