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AT4G12290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.859
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Copper amine oxidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G62810.1); Has 1550 Blast hits to 1547 proteins in 275 species: Archae - 14; Bacteria - 376; Metazoa - 251; Fungi - 449; Plants - 243; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G12290-MONOMEREC:1.4.3.-eggNOG:COG3733eggNOG:KOG1186
EMBL:AY139770EMBL:BT004538EMBL:CP002687EnsemblPlants:AT4G12290
EnsemblPlants:AT4G12290.1entrez:826838Gene3D:2.70.98.20GeneID:826838
GO:GO:0005507GO:GO:0005768GO:GO:0005773GO:GO:0005794
GO:GO:0005802GO:GO:0008131GO:GO:0009308GO:GO:0016021
GO:GO:0048038Gramene:AT4G12290.1hmmpanther:PTHR10638hmmpanther:PTHR10638:SF39
InterPro:IPR000269InterPro:IPR015798InterPro:IPR015800InterPro:IPR015802
InterPro:IPR016182KEGG:00260+1.4.3.21KEGG:00350+1.4.3.21KEGG:00360+1.4.3.21
KEGG:00410+1.4.3.21KEGG:00950+1.4.3.21KEGG:00960+1.4.3.21KEGG:ath:AT4G12290
KO:K00276OMA:LRAHPPFPANTHER:PTHR10638Pfam:PF01179
Pfam:PF02727Pfam:PF02728PhylomeDB:Q8L742PROSITE:PS01164
PROSITE:PS01165Proteomes:UP000006548Reactome:R-ATH-211945RefSeq:NP_192966.5
scanprosite:PS01164scanprosite:PS01165SMR:Q8L742STRING:3702.AT4G12290.1
SUPFAM:SSF49998SUPFAM:SSF54416TAIR:AT4G12290TMHMM:TMhelix
UniGene:At.19654UniProt:Q8L742
Coordinates (TAIR10) chr4:+:7304434..7306973
Molecular Weight (calculated) 83237.60 Da
IEP (calculated) 6.16
GRAVY (calculated) -0.38
Length 741 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQKSFFRLI FLIVTAGFII SFTSTNFPHA PTRLLDCTDS SSSPLCASRN FLFNKQQPRP IPKHDPKPNT KNHDHVSDTP NHPLDPLTVS EINKIRSILS
101: SHALFTSGTP HALHTVVLEE PEKNLVRHWE KGNPLPPRKA SVIARVGADT HVLTVDISTG RVDSENSPVR VSGYPMMTIE EMNDITVVPF SNADFNRTII
201: SRGVNLTDVI CFPISCGWFG NKEENARVIK SQCFMTQGTP NFYMRPIEGL TILIDLDTKQ VIEITDTGRA IPIPGSTNTD YRFQKLATTD KTRPLNPISI
301: EQPRGPSFVI EDNHLVKWAN WEFHLKPDPR AGVVISRVRV HDPDTHETRD VMYKGFVSEL FVPYMDPSDA WYFKTYMDAG EYGFGLQAMP LVPLNDCPRN
401: AAYMDGVFAA ADGTPFVREN MVCIFESYAG DIGWRHSESP ITGIPIREVR PKVTLVVRMA ASVGNYDYII DYEFQTDGLI KAKVGLSGIL MVKGTTYQNK
501: NQVEKDKDGN EEELHGTLLS ENVIGVIHDH YVTFYLDLDV DGPDNSFVKV NLKRQETEPG ESPRKSYLKA VRNIAKTEKD GQIKLSLYDP SEFHVINSGK
601: TTRVGNPTGY KVVPRTTAAS LLDHDDPPQK RGAFTNNQIW VTPYNKSEQW AGGLFTYQSH GDDTLAVWSD RDRDIENKDI VVWYTLGFHH IPCQEDFPIM
701: PTVSSSFDLK PVNFFERNPI LSAAPNFEHD LPVCGVQSVS A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)