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AT4G13250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27137770 (2016): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Encodes a chlorophyll b reductase involved in the degradation of chlorophyll b and LHCII (light harvesting complex II).
Computational
Description (TAIR10)
NON-YELLOW COLORING 1 (NYC1); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NYC1-like (TAIR:AT5G04900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G13250-MONOMERBioCyc:ARA:GQT-1209-MONOMERBioCyc:MetaCyc:AT4G13250-MONOMERBioGrid:12239
EC:1.1.1.294eggNOG:COG1028eggNOG:KOG0725EMBL:AB255028
EMBL:AL049751EMBL:AL161535EMBL:AY057697EMBL:CP002687
EnsemblPlants:AT4G13250EnsemblPlants:AT4G13250.1entrez:826942ExpressionAtlas:Q93ZA0
Gene3D:3.40.50.720GeneID:826942Genevisible:Q93ZA0GO:GO:0009507
GO:GO:0009535GO:GO:0010304GO:GO:0015996GO:GO:0016021
GO:GO:0034256gramene_pathway:1.1.1.294gramene_pathway:PWY-5068hmmpanther:PTHR24314
hmmpanther:PTHR24314:SF10HOGENOM:HOG000005933InParanoid:Q93ZA0IntAct:Q93ZA0
InterPro:IPR002347InterPro:IPR016040ncoils:CoilOMA:EIMSKAS
PaxDb:Q93ZA0Pfam:PF00106Pfam:Q93ZA0PhylomeDB:Q93ZA0
PIR:T07705PRIDE:Q93ZA0PRINTS:PR00081PRO:PR:Q93ZA0
ProteinModelPortal:Q93ZA0Proteomes:UP000006548RefSeq:NP_567400.1SMR:Q93ZA0
STRING:3702.AT4G13250.1SUPFAM:SSF51735TAIR:AT4G13250tair10-symbols:NYC1
TMHMM:TMhelixUniGene:At.3267UniProt:Q93ZA0
Coordinates (TAIR10) chr4:-:7684417..7686691
Molecular Weight (calculated) 54848.40 Da
IEP (calculated) 9.92
GRAVY (calculated) -0.12
Length 496 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV
101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGST RGLGKALARE FLLSGDRVIV TSRSSESVDM
201: TVKELEQNLK EIMSNASESA RKKLSDAKVV GIACDVCKPE DVEKLSNFAV KELGSINIWI NNAGTNKGFR PLLEFTEEDI TQIVSTNLIG SILCTRGAMD
301: VMSRQHSGGH IFNMDGAGSG GSSTPLTAVY GSTKCGLRQF HGSIVKESQK TNVGLHTASP GMVLTELLLS GSSIKNKQMF NIICELPETV ARTLVPRMRV
401: VKGSGKAVNY LTPPRILLAI VTSWLRRGRW FDDQGRALYA AEADRLRNWA ENRTRLSLTD AMEMYTENTW VSVFSLSVVC AFIILQSTTP SSFPGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)