AT3G26580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 1465 Blast hits to 1065 proteins in 209 species: Archae - 4; Bacteria - 118; Metazoa - 541; Fungi - 193; Plants - 127; Viruses - 57; Other Eukaryotes - 425 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9758933..9760349 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39941.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.21 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||
| Length | 350 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAVIGNVAL LLDVNSHRTV VTDRRIRLTV VDVVLNLQKR DSHSHVSHYA ALSSNKPLES DGEARVRRFL TRGKANSRAN AVDFDDAGSS DEESSDGGGG 101: GGDEEEEEEY FDVEKERKRR AKEFHDTKEL ERKAEELQYK IDEEGDDSEE KKRMRVKREL QKVAQEQAER RKTAELMFEL GQKAYGKGMY GRAIEFLEGA 201: LTIIPRPTLF GGEIQIWLAM AYEANNRHAD CIDLYQQLEK KHPSPGIRRQ ASELRYILQA PKLKISQEEM VTIPMIGSSY DSYAVTWSDK ERDKERRMNA 301: STTNQLNSSD DFLGKLLVWR PVVGMEKNRV FWLALTLWFG LVGAALILQR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)