suba logo
AT4G24120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.551
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : YELLOW STRIPE like 1
Curator
Summary (TAIR10)
Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).
Computational
Description (TAIR10)
YELLOW STRIPE like 1 (YSL1); CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 3 (TAIR:AT5G53550.2); Has 1803 Blast hits to 1757 proteins in 564 species: Archae - 19; Bacteria - 895; Metazoa - 0; Fungi - 312; Plants - 459; Viruses - 1; Other Eukaryotes - 117 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1282-MONOMEReggNOG:COG1297eggNOG:ENOG410IEEYEMBL:AC002343
EMBL:AF387015EMBL:AL109619EMBL:AL161560EMBL:AY515560
EMBL:CP002687EnsemblPlants:AT4G24120EnsemblPlants:AT4G24120.1entrez:828512
GeneID:828512Genevisible:Q6R3L0GO:GO:0003006GO:GO:0005886
GO:GO:0006811GO:GO:0010039GO:GO:0016021GO:GO:0048316
GO:GO:0055072GO:GO:0055085Gramene:AT4G24120.1hmmpanther:PTHR31645
hmmpanther:PTHR31645:SF11HOGENOM:HOG000237697InParanoid:Q6R3L0InterPro:IPR004813
KEGG:ath:AT4G24120OMA:ACILMQDPaxDb:Q6R3L0Pfam:PF03169
Pfam:Q6R3L0PhylomeDB:Q6R3L0PIR:T13460PRIDE:Q6R3L0
PRO:PR:Q6R3L0ProteinModelPortal:Q6R3L0Proteomes:UP000006548RefSeq:NP_567694.2
STRING:3702.AT4G24120.1TAIR:AT4G24120tair10-symbols:ATYSL1tair10-symbols:YSL1
TCDB:2.A.67.2.2TIGRfam:TIGR00728TIGRFAMs:TIGR00728TMHMM:TMhelix
UniGene:At.3668UniProt:Q6R3L0
Coordinates (TAIR10) chr4:+:12524581..12527023
Molecular Weight (calculated) 74395.90 Da
IEP (calculated) 8.82
GRAVY (calculated) 0.45
Length 673 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIEQRRIMK REGEEEEDNN QLSLQEEEPD TEEEMSGRTI EPWTKQITVR GVFVSIVIGV VFSVIAQKLN LTTGIVPNLN SSAALLAFVF VQTWTKILKK
101: SGFVAKPFTR QENTMIQTSA VACYGIAVGG GFASYLLGLN HKTYVLSGVN LEGNSPKSVK EPGLGWMTAY LFVVCFIGLF VLIPLRKVMI VDLKLTYPSG
201: LATAVLINGF HTQGDAQAKK QVRGFMKYFS FSFLWGFFQW FFSGIEDCGF AQFPTFGLKA WKQTFFFDFS MTFVGAGMIC SHLVNLSLLL GAILSYGLMW
301: PLLDKLKGSW FPDNLDEHNM KSIYGYKVFL SVALILGDGL YTFVKILFVT IANVNARLKN KPNDLDDVGH KKQRKDLKED ENFLRDKIPM WFAVSGYLTF
401: AAVSTVVVPL IFPQLKWYYV IVAYIFAPSL AFCNAYGAGL TDINMAYNYG KIGLFVIAAV TGRENGVVAG LAGCGLIKSV VSVSCILMQD FKTAHYTMTS
501: PKAMFASQMI GTVVGCIVTP LSFFLFYKAF DIGNPNGEFK APYALIYRNM AILGVQGFSA LPLHCLQMCY GFFGFAVLVN VVRDLTPAKI GRFMPLPTAM
601: AVPFLVGAYF AIDMCVGTLI VFVWEKMNRK KAEFMVPAVA SGLICGEGLW TLPAAVLALA GVKPPICMKF LAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)