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AT5G59400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGESeggNOG:ENOG4111J4UEMBL:CP002688EnsemblPlants:AT5G59400
EnsemblPlants:AT5G59400.1entrez:836059ExpressionAtlas:F4KJ55GeneID:836059
GO:GO:0016021Gramene:AT5G59400.1hmmpanther:PTHR31032hmmpanther:PTHR31032:SF2
PaxDb:F4KJ55PRIDE:F4KJ55ProteinModelPortal:F4KJ55Proteomes:UP000006548
RefSeq:NP_851220.1SMR:F4KJ55TAIR:AT5G59400TMHMM:TMhelix
UniGene:At.29226UniGene:At.9719UniProt:F4KJ55
Coordinates (TAIR10) chr5:+:23957756..23959518
Molecular Weight (calculated) 33050.80 Da
IEP (calculated) 9.71
GRAVY (calculated) -0.08
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGTCTSIRP RLIGSSSIVE LSRLINRAGV PFSVRFSTRT RALHGGGLTA PTSREEGPSC IFVGPIDSAR KETLEALYRQ AKDAYYNGKP LIVDDMFDRV
101: ELKLRWYGSK SVVKYPRCSL LRQSTYADAE DDASQVLLLA TVWIMIFLFG SSACVLPTIY GVGLVYGGDP FDSGLVYSSQ LSSSVPILSK FNGILLSVLG
201: PAFGYPIASS AVRVLKGLWR NDLTALKGDC PNCGEEVFAF VRSDQSNRSA HKADCHVCEC TLEFRTKVEK SASRLGRKWV YGRIYLVSRP RRDRRSKFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)