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AT1G68650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.936
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32069796 (2020): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterized protein family (UPF0016)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterized protein family (UPF0016); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G25520.1); Has 1855 Blast hits to 1773 proteins in 684 species: Archae - 37; Bacteria - 1050; Metazoa - 159; Fungi - 141; Plants - 212; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2119eggNOG:KOG2881EMBL:AC008075EMBL:AK118742
EMBL:BT024926EMBL:CP002684EnsemblPlants:AT1G68650EnsemblPlants:AT1G68650.1
entrez:843195GeneID:843195Genevisible:Q9SX28GO:GO:0016021
Gramene:AT1G68650.1hmmpanther:PTHR12608HOGENOM:HOG000224541InParanoid:Q9SX28
InterPro:IPR001727KEGG:ath:AT1G68650OMA:WSLWDAFPANTHER:PTHR12608
PaxDb:Q9SX28Pfam:PF01169Pfam:Q9SX28PhylomeDB:Q9SX28
PIR:A96711PRIDE:Q9SX28PRO:PR:Q9SX28ProteinModelPortal:Q9SX28
Proteomes:UP000006548RefSeq:NP_177032.1STRING:3702.AT1G68650.1TAIR:AT1G68650
TMHMM:TMhelixUniGene:At.66838UniProt:Q9SX28
Coordinates (TAIR10) chr1:+:25775825..25777683
Molecular Weight (calculated) 24666.10 Da
IEP (calculated) 6.53
GRAVY (calculated) 0.34
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSLLQGFTK SLAMTFLSEI GDKTFFAAAI LAMRYPRRLV LAGCLSALIV MTILSATLGW AAPNLISRKW THHITTFLFF GFGLWSLWDG FKEGGGSEEL
101: AEVEAELDSD LKKTNDQSKN SKIEDEQKKQ KRPFLTAFFS PIFLKAFSIN FFGEWGDKSQ LATIGLAADE NPLGVVLGGI VAQTLCTTAA VLGGKSLASQ
201: ISERIVALSG GMLFIIFGIQ SLLTPVDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)