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AT4G36050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : endonuclease/exonuclease/phosphatase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: zinc ion binding, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808), Zinc finger, GRF-type (InterPro:IPR010666); Has 2122 Blast hits to 1069 proteins in 229 species: Archae - 0; Bacteria - 153; Metazoa - 440; Fungi - 325; Plants - 79; Viruses - 2; Other Eukaryotes - 1123 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G36050-MONOMEREC:4.2.99.18eggNOG:COG0708eggNOG:KOG1294
EMBL:AK318684EMBL:AL022373EMBL:AL161588EMBL:AY062550
EMBL:AY093329EMBL:CP002687EnsemblPlants:AT4G36050EnsemblPlants:AT4G36050.1
EnsemblPlants:AT4G36050.2entrez:829761ExpressionAtlas:F4JNY0Gene3D:3.60.10.10
GeneID:829761Genevisible:F4JNY0GO:GO:0003906GO:GO:0004527
GO:GO:0005634GO:GO:0006281GO:GO:0008270hmmpanther:PTHR22748
hmmpanther:PTHR22748:SF4HOGENOM:HOG000231386InParanoid:F4JNY0InterPro:IPR004808
InterPro:IPR005135InterPro:IPR010666KEGG:ath:AT4G36050KO:K10772
OMA:EDTERIQPANTHER:PTHR22748PaxDb:F4JNY0Pfam:PF03372
Pfam:PF06839PIR:T05497PRIDE:F4JNY0PRO:PR:F4JNY0
PROSITE:PS51435ProteinModelPortal:F4JNY0Proteomes:UP000006548RefSeq:NP_195329.2
RefSeq:NP_974691.2SMR:F4JNY0STRING:3702.AT4G36050.2SUPFAM:SSF56219
TAIR:AT4G36050UniGene:At.22147UniGene:At.74442UniProt:Q8W4I0
Coordinates (TAIR10) chr4:-:17052345..17054081
Molecular Weight (calculated) 45165.60 Da
IEP (calculated) 8.25
GRAVY (calculated) -0.68
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRCEAGPDF EKNEFRKWFR SLLVERGGSF SDVFRSKHPE RKDAFTCWSS SSGAEQFNYG SRIDHILVAG SCLHQDEDKQ GHSFLACHVK ECDILTEYKR
101: FKNENMPTRW KGGLVTKFKG SDHVPVFISF DDLPDIPEHS TPPLASRYLP MIYGFQQTLV SVFKKRRANE EAKAIEVSCS SSTQSNTSSI CGDISTGPLR
201: NCGSMGISLE KSCSFENKST SGVTEAETVA ATGSIDNLSD GIRASSVRAL NISRDGDRKK ARKIQSSQLS LKSFFTTNSK VNNVEDSSSS YVSSSPSSQV
301: ESITEPNVSG KEDSEPTTST QEQDQTGSSA KQKNDAALME WQRIQNLMQN SIPLCKGHKE ACVARVVKKP GPTFGRRFYV CSRAEGPSSN PEANCGYFKW
401: ASSKFRDK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)