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AT1G51550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.719
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Kelch repeat-containing F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Kelch repeat-containing F-box family protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: LOV KELCH protein 2 (TAIR:AT2G18915.1); Has 5347 Blast hits to 2769 proteins in 302 species: Archae - 18; Bacteria - 180; Metazoa - 1718; Fungi - 754; Plants - 1496; Viruses - 0; Other Eukaryotes - 1181 (source: NCBI BLink).
Protein Annotations
BioGrid:26805eggNOG:ENOG410Y5WMeggNOG:KOG0379EMBL:AC024261
EMBL:AK175424EMBL:AK175506EMBL:AY087885EMBL:BT029162
EMBL:CP002684EnsemblPlants:AT1G51550EnsemblPlants:AT1G51550.1entrez:841580
Gene3D:2.120.10.80Gene3D:2.130.10.80GeneID:841580Genevisible:Q9C8K7
Gramene:AT1G51550.1hmmpanther:PTHR23244hmmpanther:PTHR23244:SF324HOGENOM:HOG000006210
InParanoid:Q9C8K7InterPro:IPR001810InterPro:IPR015915InterPro:IPR015916
KEGG:ath:AT1G51550OMA:DGQCPNYPaxDb:Q9C8K7Pfam:PF12937
Pfam:PF13418Pfam:Q9C8K7Pfscan:PS50181PhylomeDB:Q9C8K7
PIR:A96554PRIDE:Q9C8K7PRO:PR:Q9C8K7PROSITE:PS50181
ProteinModelPortal:Q9C8K7Proteomes:UP000006548RefSeq:NP_564592.1SMR:Q9C8K7
STRING:3702.AT1G51550.1SUPFAM:0052715SUPFAM:SSF81383TAIR:AT1G51550
UniGene:At.37796UniGene:At.69747UniProt:Q9C8K7
Coordinates (TAIR10) chr1:-:19117646..19119291
Molecular Weight (calculated) 53170.40 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.23
Length 478 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAESTRNSS PPSTSQSSSP IINLPDDHLL TILLLLPVDS ILSFSMTCKR YKSLACSDSL WEALCEREWG PTSVDALKLS SLRDGFSWML MFQRVYKMDS
101: VCCHKISDPD DDDEESSSFP IPRASHSLNF VNDHLVLFGG GCQGGRHLDD TWTSYVDKSN QSILKWKKVK SGTPSGRFGH TCIVIGEYLL LFGGINDRGE
201: RLNDTWIGQV FCHEGLSWKL LNVGSLQRPR PPPRGAHSAC CIAEKKMVVH GGIGLNGVRL GDTWILELSE DFSSGTWHMV ESPQLPPPRS GHTLTCIREN
301: QVVLFGGRGL GYDVLDDVWI LDIQEPCEEK WIQIFYDFQD VPEYASLPRV GHSATLVLGG RILIYGGEDS YRHRKDDFWV LDVKTIPSSG LKPQGLSLNG
401: SSVWKKLDRI SYGPKSRSFH RACADCSGRF LYVFGGMVDG LLQPAASSGL RFDGELFMVE LVLGFSDLDH QQRPGKSM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)