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AT3G21360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.981
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Taurine catabolism dioxygenase TauD/TfdA (InterPro:IPR003819); Has 1029 Blast hits to 1021 proteins in 229 species: Archae - 0; Bacteria - 729; Metazoa - 46; Fungi - 17; Plants - 110; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Protein Annotations
DNASU:821690EC:1.-.-.-eggNOG:ENOG410IH28eggNOG:ENOG410XPT7
EMBL:AK117772EMBL:AP001305EMBL:CP002686EnsemblPlants:AT3G21360
EnsemblPlants:AT3G21360.1entrez:821690EvolutionaryTrace:Q9LIG0ExpressionAtlas:Q9LIG0
GeneID:821690Genevisible:Q9LIG0GO:GO:0005634GO:GO:0016491
GO:GO:0046872Gramene:AT3G21360.1hmmpanther:PTHR10696hmmpanther:PTHR10696:SF21
HOGENOM:HOG000272702InParanoid:Q9LIG0InterPro:IPR003819iPTMnet:B2GVM3
iPTMnet:Q9LIG0KEGG:ath:AT3G21360OMA:EYPAHQSPaxDb:Q9LIG0
PDB:1Y0ZPDB:2Q4APDBsum:1Y0ZPDBsum:2Q4A
Pfam:PF02668Pfam:Q9LIG0PhylomeDB:Q9LIG0PRIDE:Q9LIG0
PRO:PR:Q9LIG0ProteinModelPortal:Q9LIG0Proteomes:UP000006548RefSeq:NP_188773.1
SMR:Q9LIG0STRING:3702.AT3G21360.1SUPFAM:SSF51197TAIR:AT3G21360
UniGene:At.47366UniGene:At.63567UniProt:B2GVM3UniProt:Q9LIG0
Coordinates (TAIR10) chr3:+:7522865..7524036
Molecular Weight (calculated) 37213.50 Da
IEP (calculated) 5.97
GRAVY (calculated) -0.34
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MAELLLVETP IPQQKHYESK PFPAVISPPS ASIPIPALSL PLFTQTIKTQ KHYLDSLLHE SGAVLFRGFP VNSADDFNDV VEAFGFDELP YVGGAAPRTS
101: VVGRVFTANE SPPDQKIPFH HEMAQVREFP SKLFFYCEIE PKCGGETPIV LSHVVYERMK DKHPEFVQRL EEHGLLYVRV LGEDDDPSSP IGRGWKSTFL
201: THDKNLAEQR AVDLGMKLEW TEDGGAKTVM GPIPAIKYDE SRNRKVWFNS MVAAYTGWED KRNDPRKAVT FGDGKPLPAD IVHDCLRILE EECVAVPWQR
301: GDVLLIDNWA VLHSRRPFDP PRRVLASLCK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)