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AT5G19430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G12310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWPJeggNOG:ENOG41126UPEMBL:AF361602EMBL:AY058228
EMBL:CP002688EnsemblPlants:AT5G19430EnsemblPlants:AT5G19430.1entrez:832063
ExpressionAtlas:Q9ASY3Gene3D:3.30.40.10GeneID:832063GO:GO:0008270
Gramene:AT5G19430.1HOGENOM:HOG000151161IntAct:Q9ASY3InterPro:IPR001841
InterPro:IPR013083InterPro:IPR017907OMA:LFEESVCPfam:PF13639
Pfscan:PS50089PhylomeDB:Q9ASY3PROSITE:PS00518PROSITE:PS50089
Proteomes:UP000006548RefSeq:NP_568374.1scanprosite:PS00518SMART:SM00184
SMR:Q9ASY3SUPFAM:SSF57850TAIR:AT5G19430UniGene:At.19112
UniProt:Q9ASY3
Coordinates (TAIR10) chr5:+:6553998..6555616
Molecular Weight (calculated) 28397.00 Da
IEP (calculated) 5.99
GRAVY (calculated) -0.60
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSVTEIVSE QQVIDGIQDL ALQNQDKKKI QEEIHEPSFG NHGGCCAICL SEIPLQETAM VKGCEHTYCV TCILRWASCK ESPTCPQCKH PFDFLSVHRA
101: LDGSIEDFLF EESVCLLLRA SWFVPLDVVE QASYSHGYHD DFDIPYDYED EDDDLDEFYL HGSSLRIGNR RWGGNGFVRS GRQEARPVQR YSGSGSSSSS
201: SSGSSSSEPK DKQVKTTNTT GRRAKRAMKR EAANKAAEVT AAAKHEAHLV RLGRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)