AT3G03790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 47493 Blast hits to 19299 proteins in 916 species: Archae - 174; Bacteria - 5076; Metazoa - 23213; Fungi - 3118; Plants - 3847; Viruses - 203; Other Eukaryotes - 11862 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:963195..967857 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 118293.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.66 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1078 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MELSVSPQTQ KMNLQTPRKS SLSGSRKDLW FAIREGSLVD VDSALSILKK TGGNINLRNA YGLTPLHIAV WRNHIPIVRR LLAAGADPDA RDGESGWSSL 0101: HRALHFGHLA VASVLIDSGA SFTLEDIKLR TPVDLVSGPV AQVIGEQQSS EVFSWGNGAN YQLGTGNQHV QKVPGRVDSL HGCFIKLVSA AKFHSVAIST 0201: HGEVYTWGFG RGGRLGHPEF DIHSGQAAVI TPRQVISGLG SRRVKAVAAA KHHTVIATEG GDVYTWGSNR EGQLGYTSVD TQATPRKVTS LKAKIVAVSA 0301: ANKHTAVVSD CGEVFTWGCN KEGQLGYGTS NSASNYSPRL VDYLKGKVFT AIASSKYHTL VLRNDGEVYT WGHRLVTPRR VIISRNLKKA GNTLLNFHRR 0401: RPLRLTAIAA GMVHSLALAE DGAFFYWVSS DSNLRCQQLH SLHGKTVVSI SAGKYWASAV TSTGEVYMWD GKNGKDIAPS LSRLHNLKRA TTVAVGETHL 0501: LVVGSLYHPA YAPIVLKKSQ TLQADKCREE ENEELDEGFM FDDVESVNVL QSVQYDNPKE RIVPSLKSLC EKVAAECIVE PRNAIQLLEI ADSLGAEDLK 0601: KYCEDIVIRN LDFILTFSPQ SIANTSPDVL ANLEKLLDDR SSETWSSRPL PTPTATFPVV IDSEEEESES DILRTRDSHV KHFSSIGGTR MDSFLQPEDE 0701: LTQHNSKEVR ALRKKLQQIE ILEAKQSRGQ LLDGQQIAKL QKKLDIESSL VELGIPVEEF PEAKATTALP LEGKANKKGK KKKKGNQRFV QVETFPEFGE 0801: VKVEIDTMQD KEIEEICEAI KPKGGKTMLD TTMISGFPKE SDFVSLSQKK DNPPDSPRSK KLATAANKKK NRKGGLSMFL TGALDDVPKP VVAPPPRPKI 0901: EGPVWGGAKI SKGLSSLRDI QDEQSKTRSH EPVRTTKNQS GDDSPGKSEG KILLSSFLTS KPIPMEPAKS LQQSDVEKGT PPWASSETPR KLSRPSLRDI 1001: QMQEVKKQQS LSHSPKTKTS GFTVATGQGS PSDSPGTNRW FKPEIDAPSA IRSIQIEEKA MKDLRRFYSS VKVVRNQP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)