AT3G46590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRF-like 1 | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers. | ||||||||||||
| Computational Description (TAIR10) |
TRF-like 1 (TRFL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin supergroup (InterPro:IPR019955), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: telomeric repeat binding protein 1 (TAIR:AT5G59430.3); Has 310 Blast hits to 294 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17153642..17155946 | ||||||||||||
| Molecular Weight (calculated) | 61650.00 Da | ||||||||||||
| IEP (calculated) | 9.49 | ||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||
| Length | 552 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSHKVLEFG DDGYKLPAQA RAPRSLRKRI YEKKIPGDDK MCAIDLLATV AGSLLLESKS PVNACLVVQN TVKNEYPADE NPVKAVPYSE SPSLFDNGKC 101: GFSSVITNPN HLLVGDKVGK EVEGFSSLGV SGDVKPDVVA SIGSNSSTEV GACGNGSPNE SRDDVNLFSR NDDDENFSGY IRTRMTRPVP RIGDRRIRKI 201: LASRHWKGGS KNNTDAKPWY CSKRSYYLHH HQRSYPIKKR KYFDSVYDSN SDDYRLQGKT HKGSRTISSM KSRNASFVSR DHHVKLRIKS FRVPELFVEI 301: PETATVGSLK RMVMEAVTTI LGDGLRVGLM VQGKKVRDDG KTLLQTGISE ENNHLDSLGF SLEPSLETTP QPLLSSYLSD HACDDVTLCH DNALDSSHEP 401: EPSPADSFGK LGTSDHSRAL IPVASAAMLA PRPPNRKFKR TEQQLAAQRR IRRPFSVTEV EALVQAVEKL GTGRWRDVKV RAFEDADHRT YVDLKDKWKT 501: LVHTARISPQ QRRGEPVPQE LLDRVLKAHA YWSQHLMHQL QTEPPSTQVE AL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)