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AT3G10420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24124904 (2013): plastid
  • PMID:20423899 (2010): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73170.1); Has 1488 Blast hits to 1479 proteins in 630 species: Archae - 20; Bacteria - 1182; Metazoa - 12; Fungi - 5; Plants - 115; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3854eggNOG:ENOG410IHVJEMBL:AC011560EMBL:CP002686
EnsemblPlants:AT3G10420EnsemblPlants:AT3G10420.1entrez:820206ExpressionAtlas:Q9CAE6
Gene3D:3.40.50.300GeneID:820206GO:GO:0005524Gramene:AT3G10420.1
hmmpanther:PTHR20953hmmpanther:PTHR20953:SF2HOGENOM:HOG000011904InterPro:IPR003593
InterPro:IPR003959InterPro:IPR027417Pfam:PF00004PhylomeDB:Q9CAE6
Proteomes:UP000006548RefSeq:NP_850553.1SMART:SM00382SMR:Q9CAE6
STRING:3702.AT3G10420.2SUPFAM:SSF52540TAIR:AT3G10420tair10-symbols:SPD1
UniGene:At.22782UniProt:Q9CAE6
Coordinates (TAIR10) chr3:+:3239307..3241571
Molecular Weight (calculated) 60026.70 Da
IEP (calculated) 5.95
GRAVY (calculated) -0.22
Length 547 amino acids
Sequence (TAIR10)
(BLAST)
001: MRALNSRLVL IDINSSWQAS RRLISATATA FSSDSSSSFR RTRGARQRIA SSKSPASSPS PVRRPSDGFS FDVRSPSSDS SISSRKSPTT APPTVELDAF
101: LEILPPATRK ELVKHEAIEE LIEVVMDLGR KPLARFPSGD WVISEQPVTH QDLELAVSKV GDFSDDNRSG IDRSLHRISA IRNRKLQVIG LTCRVGRVVS
201: GSAEIIRDLI EGGGSILVIG SPGVGKTTLI REIARMLADE HRKRVVIVDT SNEIGGDGDV PHSGIGRARR MQVPNVNLQH DVMIEAVENH MPETIIIDEI
301: GTELEALAAS TIAQRGVQLV ATAHGMTIDN IIKNPSLQIL IGGIESVTLG DEEARKRKVQ KTILERKGPP TFTCAVEMIS RTECRVHQRL DVTVDAILAG
401: KSAPFEIRQI RGEDDVPHKL VTPIPLENLE EEPAPLLNRD FVSELLSDDE DEDFLLIRSN KARSNTYTSP RSSPVHVYTY NVLEADLLQV AEVMGLDDEI
501: EVTDDVGEAD VILASSSELK QNSSIRRVAK LHKLPIFVIK VSFFLHG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)