AT1G54130.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : RELA/SPOT homolog 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
RELA/SPOT homolog 3 (RSH3); FUNCTIONS IN: GTP diphosphokinase activity; INVOLVED IN: guanosine tetraphosphate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 2 (TAIR:AT3G14050.1); Has 13036 Blast hits to 12330 proteins in 2448 species: Archae - 4; Bacteria - 8654; Metazoa - 208; Fungi - 27; Plants - 218; Viruses - 4; Other Eukaryotes - 3921 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:20211177..20213761 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 79719.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 715 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVVATTIALY ASPASTVCST AHQINAHISC DLDLNSRSSS ASSSTSSPTI GGLSLLFSGA SVKSSSSSSS SHPSVGEELA SIRHDRSEDR TLSGSFCYSP 101: SKFIGSSYLK RDHQSPVSVL HGPISSGNSP PMRISRDRNL DGGSALRVGS SRLFNGFVRK AIGSCVDYDT DSVLVDEQLP FTMDDGFEGE RRQPYARDLL 201: RRAQLKHKIF EDESVIKAFY EAEKAHRGQM RATGDPYLQH CVETAMLLAD IGANSTVVVA GILHDTLDDS FMSYDYILRT FGSGVADLVE GVSKLSQLSK 301: LARENNTACK TVEADRLHTM FLAMADARAV LIKLADRLHN MMTLYALPPV KRQRFAKETL EIFAPLANRL GISSWKVKLE NLCFKHLHPD QHHEMSDMLE 401: DSFDEAMITS AIEKLEQALK KEGISYHVVS GRHKSLYSIY CKMLKKKLTM DEIHDIHGLR LIVDNEKDCY KALGVVHKLW SEVPGKLKDY ISHPKFNGYQ 501: SLHTVVMGDG TIPLEVQIRT KEMHLQAEFG FAAHWRYKEG DCKHSSFVLQ MVEWARWVVT WHFETMSKDG SSICSSEPLC SFPSHAEDCP FSYKPSGNQE 601: GPVYVIVIEN EKMTVQEFPE NSTVSDLLRR AGPGSSRWSM YSIPAKEELR PRLNQTPVSD LKCKLKMGDV VELTPAIPDK SLTEYREEIQ RMYDRGLAFS 701: RPHRAATGTM VGWGS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)