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AT1G54130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RELA/SPOT homolog 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RELA/SPOT homolog 3 (RSH3); FUNCTIONS IN: GTP diphosphokinase activity; INVOLVED IN: guanosine tetraphosphate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 2 (TAIR:AT3G14050.1); Has 13036 Blast hits to 12330 proteins in 2448 species: Archae - 4; Bacteria - 8654; Metazoa - 208; Fungi - 27; Plants - 218; Viruses - 4; Other Eukaryotes - 3921 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G54130-MONOMERBioGrid:27078EC:2.7.6.5eggNOG:COG0317
eggNOG:KOG1157EMBL:AC006577EMBL:AK227169EMBL:CP002684
EnsemblPlants:AT1G54130EnsemblPlants:AT1G54130.1entrez:841853GeneID:841853
Genevisible:Q9SYH1GO:GO:0005524GO:GO:0005525GO:GO:0008728
GO:GO:0008893GO:GO:0009507GO:GO:0015969GO:GO:0016301
GO:GO:0042594Gramene:AT1G54130.1hmmpanther:PTHR21262hmmpanther:PTHR21262:SF14
HOGENOM:HOG000243166InParanoid:Q9SYH1InterPro:IPR003607InterPro:IPR007685
iPTMnet:Q9SYH1KEGG:ath:AT1G54130OMA:MYSIPAKPaxDb:Q9SYH1
Pfam:PF04607Pfam:PF13328Pfam:Q9SYH1PhylomeDB:Q9SYH1
PIR:D96582PRIDE:Q9SYH1PRO:PR:Q9SYH1ProteinModelPortal:Q9SYH1
Proteomes:UP000006548RefSeq:NP_564652.2SMART:SM00471SMART:SM00954
SMR:Q9SYH1STRING:3702.AT1G54130.1SUPFAM:SSF109604SUPFAM:SSF81301
TAIR:AT1G54130tair10-symbols:AT-RSH3tair10-symbols:ATRSH3tair10-symbols:RSH3
UniGene:At.11116UniProt:Q9SYH1
Coordinates (TAIR10) chr1:+:20211177..20213761
Molecular Weight (calculated) 79719.00 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.33
Length 715 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVATTIALY ASPASTVCST AHQINAHISC DLDLNSRSSS ASSSTSSPTI GGLSLLFSGA SVKSSSSSSS SHPSVGEELA SIRHDRSEDR TLSGSFCYSP
101: SKFIGSSYLK RDHQSPVSVL HGPISSGNSP PMRISRDRNL DGGSALRVGS SRLFNGFVRK AIGSCVDYDT DSVLVDEQLP FTMDDGFEGE RRQPYARDLL
201: RRAQLKHKIF EDESVIKAFY EAEKAHRGQM RATGDPYLQH CVETAMLLAD IGANSTVVVA GILHDTLDDS FMSYDYILRT FGSGVADLVE GVSKLSQLSK
301: LARENNTACK TVEADRLHTM FLAMADARAV LIKLADRLHN MMTLYALPPV KRQRFAKETL EIFAPLANRL GISSWKVKLE NLCFKHLHPD QHHEMSDMLE
401: DSFDEAMITS AIEKLEQALK KEGISYHVVS GRHKSLYSIY CKMLKKKLTM DEIHDIHGLR LIVDNEKDCY KALGVVHKLW SEVPGKLKDY ISHPKFNGYQ
501: SLHTVVMGDG TIPLEVQIRT KEMHLQAEFG FAAHWRYKEG DCKHSSFVLQ MVEWARWVVT WHFETMSKDG SSICSSEPLC SFPSHAEDCP FSYKPSGNQE
601: GPVYVIVIEN EKMTVQEFPE NSTVSDLLRR AGPGSSRWSM YSIPAKEELR PRLNQTPVSD LKCKLKMGDV VELTPAIPDK SLTEYREEIQ RMYDRGLAFS
701: RPHRAATGTM VGWGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)