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AT5G56190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.493
nucleus 0.452
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G13340.2); Has 22501 Blast hits to 10717 proteins in 548 species: Archae - 84; Bacteria - 7160; Metazoa - 5614; Fungi - 4737; Plants - 1943; Viruses - 0; Other Eukaryotes - 2963 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INKFeggNOG:ENOG4111Y9IEMBL:AY080763EMBL:AY122989
EMBL:CP002688EnsemblPlants:AT5G56190EnsemblPlants:AT5G56190.1entrez:835718
ExpressionAtlas:Q8RXP4Gene3D:2.130.10.10GeneID:835718Gramene:AT5G56190.1
hmmpanther:PTHR22847hmmpanther:PTHR22847:SF478HOGENOM:HOG000239432InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986Pfam:PF00400Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q8RXP4PROSITE:PS50082PROSITE:PS50294
Proteomes:UP000006548RefSeq:NP_851199.1SMART:SM00320SMR:Q8RXP4
SUPFAM:SSF50978TAIR:AT5G56190UniGene:At.24394UniProt:Q8RXP4
Coordinates (TAIR10) chr5:+:22742563..22744909
Molecular Weight (calculated) 49687.60 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.53
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MADFDEYMAD EYDMDDLEDD MNAAFDGRDI DASDSEVEDF DQLNKAADTS AAQARNGKDI QGIPWDSLTL TRKDYRKTRL EQYKNYENIP NSGDESAKKC
101: MNTEKGSSFY EFRRNSRSVR STILHFQLRN LVWATSKHDV YLLSNYSISH WSSLTGCRSE ILNVKGHVAP SEKHPESLLE GFTETQVSTL AVKERLLVAG
201: GFQGELICKH LDRPGVSFCS RTTYTENAIT NAVDIYRNSS GALHFMASNN DCGVRDFDME RYKLVQLFRY LWPVNHSSLS PDGKLVAVVG DDPDGLLVDT
301: SNGQTIGTLK GHLDYSFASA WHPNGVTFAT GNQDKTCRIW DTRKLSESVA VLKGNLGAVR SIRFTSDGRY VAMAEPADFV HIYDTKSGYK KEQEIDFFGE
401: ISGISFSPDT ESLFIGVWDR TYGSLLEYGR TRDYTYLDSL L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)